Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.07□□□□□ -0.32
RNF4P78317 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC13.07□□□□□ -0.32
RNF4P78317 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.07□□□□□ -0.32
RNF4P78317 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.07□□□□□ -0.32
RNF4P78317 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.07□□□□□ -0.32
RNF4P78317 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
RNF4P78317 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 API5-208ENST00000531273 1868 ntTSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 RCC2P1-201ENST00000452257 1476 ntBASIC13.06□□□□□ -0.32
RNF4P78317 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 AL928921.2-201ENST00000641325 2442 ntBASIC13.06□□□□□ -0.32
RNF4P78317 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 AC091046.1-201ENST00000331871 207 ntBASIC13.06□□□□□ -0.32
RNF4P78317 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC13.06□□□□□ -0.32
RNF4P78317 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC13.06□□□□□ -0.32
RNF4P78317 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC13.06□□□□□ -0.32
RNF4P78317 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC13.06□□□□□ -0.32
RNF4P78317 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC13.06□□□□□ -0.32
RNF4P78317 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC13.06□□□□□ -0.32
RNF4P78317 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.06□□□□□ -0.32
RNF4P78317 AC005632.3-201ENST00000605544 308 ntBASIC13.06□□□□□ -0.32
RNF4P78317 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
RNF4P78317 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
RNF4P78317 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.06□□□□□ -0.32
RNF4P78317 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.06□□□□□ -0.32
RNF4P78317 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.06□□□□□ -0.32
RNF4P78317 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.06□□□□□ -0.32
RNF4P78317 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.06□□□□□ -0.32
RNF4P78317 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
RNF4P78317 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RNF4P78317 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.05□□□□□ -0.32
RNF4P78317 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.05□□□□□ -0.32
RNF4P78317 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 KRT8P43-201ENST00000406052 1458 ntBASIC13.05□□□□□ -0.32
RNF4P78317 AC061965.1-201ENST00000560524 1465 ntBASIC13.05□□□□□ -0.32
RNF4P78317 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
RNF4P78317 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.05□□□□□ -0.32
RNF4P78317 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 AP000356.3-201ENST00000382243 753 ntBASIC13.05□□□□□ -0.32
RNF4P78317 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC13.05□□□□□ -0.32
RNF4P78317 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 LINC00265-2P-201ENST00000413372 782 ntBASIC13.05□□□□□ -0.32
RNF4P78317 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.05□□□□□ -0.32
RNF4P78317 AL627422.1-201ENST00000434104 580 ntBASIC13.05□□□□□ -0.32
RNF4P78317 FGFR3P1-201ENST00000449999 601 ntBASIC13.05□□□□□ -0.32
RNF4P78317 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms