Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC009118.3-201ENST00000622896 873 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 CD9-212ENST00000610354 1315 ntTSL 5 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 SERPING1-202ENST00000340687 1719 ntTSL 5 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 RN7SL838P-201ENST00000481676 295 ntBASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 RN7SL76P-201ENST00000482435 289 ntBASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 PRDM2-213ENST00000503842 705 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 RN7SL202P-201ENST00000584410 262 ntBASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 CDIPT-AS1-203ENST00000638164 713 ntBASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 KIR2DL4-203ENST00000357494 1396 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHANK3Q9BYB0 IGHE-202ENST00000641420 1485 ntAPPRIS P5 BASIC17.46■□□□□ 0.38
SHANK3Q9BYB0 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 GLT6D1-201ENST00000371763 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 GLT6D1-202ENST00000613244 1523 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 FTH1-205ENST00000529631 507 ntTSL 4 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 ALDOA-229ENST00000636698 420 ntTSL 3 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 PXK-210ENST00000479241 2817 ntTSL 2 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 AC135506.1-201ENST00000603877 1799 ntBASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.45■□□□□ 0.38
SHANK3Q9BYB0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AC024028.1-201ENST00000437145 437 ntTSL 3 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 HNRNPA1P3-201ENST00000440968 551 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 DMKN-244ENST00000480502 820 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 DERL1-204ENST00000519018 575 ntTSL 4 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 ABCC6P2-201ENST00000526069 590 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AC015818.3-201ENST00000583797 589 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 METTL23-211ENST00000589977 617 ntTSL 3 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AC138430.2-201ENST00000624068 504 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 BEND3P1-201ENST00000421591 1944 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 TBC1D3P1-201ENST00000590047 1693 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 DBET-201ENST00000630918 3363 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms