Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AC099521.3-201ENST00000624251 2938 ntBASIC13.64□□□□□ -0.23
PCDH1Q08174 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC13.64□□□□□ -0.23
PCDH1Q08174 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC13.64□□□□□ -0.23
PCDH1Q08174 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.64□□□□□ -0.23
PCDH1Q08174 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCDH1Q08174 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
PCDH1Q08174 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
PCDH1Q08174 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
PCDH1Q08174 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.63□□□□□ -0.23
PCDH1Q08174 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.63□□□□□ -0.23
PCDH1Q08174 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
PCDH1Q08174 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
PCDH1Q08174 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 BX679664.3-201ENST00000414070 555 ntBASIC13.63□□□□□ -0.23
PCDH1Q08174 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
PCDH1Q08174 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.63□□□□□ -0.23
PCDH1Q08174 RPS9P1-201ENST00000419943 583 ntBASIC13.63□□□□□ -0.23
PCDH1Q08174 ACTBP11-201ENST00000436287 1126 ntBASIC13.63□□□□□ -0.23
PCDH1Q08174 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.63□□□□□ -0.23
PCDH1Q08174 AC113935.1-201ENST00000471722 555 ntBASIC13.63□□□□□ -0.23
PCDH1Q08174 KRT8P1-201ENST00000557533 1207 ntBASIC13.63□□□□□ -0.23
PCDH1Q08174 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.63□□□□□ -0.23
PCDH1Q08174 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 PHB-210ENST00000511832 1509 ntTSL 2 BASIC13.63□□□□□ -0.23
PCDH1Q08174 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
PCDH1Q08174 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.63□□□□□ -0.23
PCDH1Q08174 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCDH1Q08174 AC008620.2-201ENST00000510294 1569 ntBASIC13.62□□□□□ -0.23
PCDH1Q08174 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC13.62□□□□□ -0.23
PCDH1Q08174 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.62□□□□□ -0.23
PCDH1Q08174 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.62□□□□□ -0.23
PCDH1Q08174 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC13.62□□□□□ -0.23
PCDH1Q08174 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
PCDH1Q08174 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC13.62□□□□□ -0.23
PCDH1Q08174 AL008707.1-201ENST00000422498 534 ntBASIC13.62□□□□□ -0.23
PCDH1Q08174 AC007274.1-201ENST00000439805 662 ntBASIC13.62□□□□□ -0.23
PCDH1Q08174 RN7SL277P-201ENST00000481521 288 ntBASIC13.62□□□□□ -0.23
PCDH1Q08174 AC090142.2-201ENST00000483263 416 ntBASIC13.62□□□□□ -0.23
PCDH1Q08174 AC091804.1-201ENST00000486888 567 ntBASIC13.62□□□□□ -0.23
PCDH1Q08174 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC13.62□□□□□ -0.23
PCDH1Q08174 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.62□□□□□ -0.23
PCDH1Q08174 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC13.62□□□□□ -0.23
PCDH1Q08174 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.62□□□□□ -0.23
PCDH1Q08174 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 RN7SL219P-201ENST00000582872 296 ntBASIC13.62□□□□□ -0.23
PCDH1Q08174 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.62□□□□□ -0.23
PCDH1Q08174 AC100757.4-201ENST00000626934 759 ntBASIC13.62□□□□□ -0.23
PCDH1Q08174 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
PCDH1Q08174 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.62□□□□□ -0.23
PCDH1Q08174 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.62□□□□□ -0.23
PCDH1Q08174 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
PCDH1Q08174 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms