Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 AC072061.1-201ENST00000569710 2234 ntBASIC13.4□□□□□ -0.26
CLK1P49759 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.4□□□□□ -0.26
CLK1P49759 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.4□□□□□ -0.26
CLK1P49759 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CLK1P49759 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.4□□□□□ -0.26
CLK1P49759 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.4□□□□□ -0.26
CLK1P49759 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
CLK1P49759 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 AL590640.2-201ENST00000457038 527 ntBASIC13.4□□□□□ -0.26
CLK1P49759 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CLK1P49759 AL391280.1-201ENST00000506969 1062 ntBASIC13.4□□□□□ -0.26
CLK1P49759 AC104989.1-201ENST00000519711 778 ntBASIC13.4□□□□□ -0.26
CLK1P49759 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.4□□□□□ -0.26
CLK1P49759 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.4□□□□□ -0.26
CLK1P49759 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.4□□□□□ -0.26
CLK1P49759 AP005482.1-201ENST00000563722 1273 ntBASIC13.4□□□□□ -0.26
CLK1P49759 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.4□□□□□ -0.26
CLK1P49759 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CLK1P49759 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.4□□□□□ -0.26
CLK1P49759 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CLK1P49759 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 TNRC18P1-201ENST00000502875 3650 ntBASIC13.4□□□□□ -0.26
CLK1P49759 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 AMT-221ENST00000538581 2038 ntTSL 2 BASIC13.4□□□□□ -0.26
CLK1P49759 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
CLK1P49759 AC090643.2-201ENST00000623442 2029 ntBASIC13.4□□□□□ -0.26
CLK1P49759 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CLK1P49759 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC13.4□□□□□ -0.27
CLK1P49759 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CLK1P49759 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CLK1P49759 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CLK1P49759 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CLK1P49759 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 VDR-201ENST00000229022 4773 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CLK1P49759 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.39□□□□□ -0.27
CLK1P49759 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 AC079776.1-201ENST00000401540 1152 ntBASIC13.39□□□□□ -0.27
CLK1P49759 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.39□□□□□ -0.27
CLK1P49759 AL355994.2-201ENST00000447882 704 ntBASIC13.39□□□□□ -0.27
CLK1P49759 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 CTBP2P5-201ENST00000454986 1264 ntBASIC13.39□□□□□ -0.27
CLK1P49759 CROCCP4-201ENST00000457096 498 ntBASIC13.39□□□□□ -0.27
CLK1P49759 ACA64.2-201ENST00000459014 129 ntBASIC13.39□□□□□ -0.27
CLK1P49759 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.39□□□□□ -0.27
CLK1P49759 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.39□□□□□ -0.27
CLK1P49759 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC13.39□□□□□ -0.27
CLK1P49759 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
CLK1P49759 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.39□□□□□ -0.27
CLK1P49759 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.39□□□□□ -0.27
CLK1P49759 C2orf69P2-201ENST00000562032 1123 ntBASIC13.39□□□□□ -0.27
CLK1P49759 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.39□□□□□ -0.27
CLK1P49759 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.39□□□□□ -0.27
CLK1P49759 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC13.39□□□□□ -0.27
CLK1P49759 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.39□□□□□ -0.27
CLK1P49759 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
CLK1P49759 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.39□□□□□ -0.27
CLK1P49759 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CLK1P49759 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 SLC3A1-205ENST00000409387 2334 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.39□□□□□ -0.27
CLK1P49759 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.39□□□□□ -0.27
CLK1P49759 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC13.39□□□□□ -0.27
CLK1P49759 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLK1P49759 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.39□□□□□ -0.27
CLK1P49759 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CLK1P49759 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms