Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HTTP42858 AC027290.1-201ENST00000537827 484 ntTSL 5 BASIC15.16■□□□□ 0.02
HTTP42858 FP325317.1-201ENST00000539936 1042 ntBASIC15.16■□□□□ 0.02
HTTP42858 CACNA1C-IT3-201ENST00000542680 622 ntTSL 3 BASIC15.16■□□□□ 0.02
HTTP42858 AL031058.1-201ENST00000561592 888 ntBASIC15.16■□□□□ 0.02
HTTP42858 AC138430.2-201ENST00000624068 504 ntBASIC15.16■□□□□ 0.02
HTTP42858 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HTTP42858 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 HSPA7-201ENST00000445535 1927 ntBASIC15.15■□□□□ 0.02
HTTP42858 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HTTP42858 AC090587.1-201ENST00000415809 494 ntTSL 3 BASIC15.15■□□□□ 0.02
HTTP42858 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC15.15■□□□□ 0.02
HTTP42858 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC15.15■□□□□ 0.02
HTTP42858 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC15.15■□□□□ 0.02
HTTP42858 NDUFB1-202ENST00000553514 454 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC15.15■□□□□ 0.02
HTTP42858 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC15.15■□□□□ 0.02
HTTP42858 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HTTP42858 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HTTP42858 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
HTTP42858 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC15.15■□□□□ 0.02
HTTP42858 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 KRTAP2-2-202ENST00000542910 390 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
HTTP42858 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC15.15■□□□□ 0.02
HTTP42858 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 AL109983.1-201ENST00000603234 646 ntBASIC15.15■□□□□ 0.02
HTTP42858 AC009118.3-201ENST00000622896 873 ntBASIC15.15■□□□□ 0.02
HTTP42858 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 AC092384.3-202ENST00000564646 2873 ntBASIC15.15■□□□□ 0.02
HTTP42858 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HTTP42858 CDCA7L-202ENST00000373934 1830 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 ZNF114-201ENST00000315849 2206 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC15.15■□□□□ 0.02
HTTP42858 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HTTP42858 LINC02344-201ENST00000443576 644 ntTSL 2 BASIC15.15■□□□□ 0.02
HTTP42858 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC15.15■□□□□ 0.02
HTTP42858 SCOC-209ENST00000512749 841 ntAPPRIS ALT1 TSL 3 BASIC15.15■□□□□ 0.02
HTTP42858 AKR1B1P3-201ENST00000525311 588 ntBASIC15.15■□□□□ 0.02
HTTP42858 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HTTP42858 FMR1-218ENST00000621447 1832 ntTSL 3 BASIC15.14■□□□□ 0.01
HTTP42858 LINC02154-201ENST00000412485 1497 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 LINC02151-201ENST00000452629 921 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 AC016304.1-201ENST00000476363 413 ntBASIC15.14■□□□□ 0.01
HTTP42858 AK2-208ENST00000487289 920 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 AC025178.1-201ENST00000503441 834 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC15.14■□□□□ 0.01
HTTP42858 MIR4526-201ENST00000583168 87 ntBASIC15.14■□□□□ 0.01
HTTP42858 ZNF551-202ENST00000596085 469 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 U62317.4-201ENST00000609758 448 ntBASIC15.14■□□□□ 0.01
HTTP42858 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 MDC1-209ENST00000613547 830 ntTSL 5 BASIC15.14■□□□□ 0.01
HTTP42858 AL139424.3-202ENST00000641619 917 ntBASIC15.14■□□□□ 0.01
HTTP42858 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.14■□□□□ 0.01
HTTP42858 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HTTP42858 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 BX088651.4-202ENST00000428895 1479 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 LY6G6F-201ENST00000375832 920 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HTTP42858 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC15.14■□□□□ 0.01
HTTP42858 AC010997.1-201ENST00000447646 350 ntBASIC15.14■□□□□ 0.01
HTTP42858 MTHFD2P7-201ENST00000483867 983 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms