Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.34□□□□□ -0.43
COL8A1P27658 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.34□□□□□ -0.43
COL8A1P27658 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
COL8A1P27658 BAX-205ENST00000391871 687 ntTSL 5 BASIC12.34□□□□□ -0.43
COL8A1P27658 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC12.34□□□□□ -0.43
COL8A1P27658 AL137244.1-201ENST00000422931 865 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 CDK4P1-201ENST00000454213 828 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC12.34□□□□□ -0.43
COL8A1P27658 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
COL8A1P27658 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
COL8A1P27658 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
COL8A1P27658 AC090820.1-201ENST00000519722 591 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC12.34□□□□□ -0.43
COL8A1P27658 KLF17P1-201ENST00000547105 1126 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 NDUFB10P1-201ENST00000567319 521 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 TYMSP2-201ENST00000589501 424 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 AP005264.5-201ENST00000590066 467 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC12.34□□□□□ -0.43
COL8A1P27658 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
COL8A1P27658 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 NF1P11-201ENST00000621292 1282 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 AL591471.1-201ENST00000621855 229 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC12.34□□□□□ -0.43
COL8A1P27658 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC12.34□□□□□ -0.43
COL8A1P27658 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
COL8A1P27658 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC12.34□□□□□ -0.43
COL8A1P27658 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 AC105250.1-201ENST00000509378 2057 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
COL8A1P27658 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 AC020658.6-201ENST00000623564 1870 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.33□□□□□ -0.43
COL8A1P27658 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
COL8A1P27658 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.43
COL8A1P27658 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
COL8A1P27658 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.33□□□□□ -0.44
COL8A1P27658 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 AL050341.2-201ENST00000567508 1541 ntBASIC12.33□□□□□ -0.44
COL8A1P27658 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 NQO2-204ENST00000380454 851 ntTSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 MED15P3-201ENST00000413613 326 ntBASIC12.33□□□□□ -0.44
COL8A1P27658 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC12.33□□□□□ -0.44
COL8A1P27658 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 AC147876.1-201ENST00000504408 322 ntBASIC12.33□□□□□ -0.44
COL8A1P27658 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC12.33□□□□□ -0.44
COL8A1P27658 AC100858.1-201ENST00000514059 1228 ntBASIC12.33□□□□□ -0.44
COL8A1P27658 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC12.33□□□□□ -0.44
COL8A1P27658 AC087203.1-201ENST00000532111 1181 ntBASIC12.33□□□□□ -0.44
COL8A1P27658 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 AL109954.1-202ENST00000564051 2148 ntBASIC12.33□□□□□ -0.44
COL8A1P27658 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC12.33□□□□□ -0.44
COL8A1P27658 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms