Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MLX-203ENST00000435881 2428 ntAPPRIS ALT1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 KIF1B-212ENST00000622724 8588 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 OR4D9-203ENST00000641962 6123 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 C14orf159-234ENST00000525393 2471 ntTSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 HCN3-201ENST00000368358 3718 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 NMT1-213ENST00000592782 4999 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 MYH9-201ENST00000216181 7501 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 NEK6-205ENST00000394199 2535 ntTSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 SPDYE15P-201ENST00000424157 909 ntBASIC8.68□□□□□ -1.02
LINC00643Q86TS7 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 PHKB-208ENST00000566044 3829 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 IGHV3-41-201ENST00000613121 348 ntBASIC8.68□□□□□ -1.02
LINC00643Q86TS7 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 KIAA0513-206ENST00000566428 7772 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 TKTL1-202ENST00000369915 2642 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 MRPL37P1-201ENST00000592451 1337 ntBASIC8.68□□□□□ -1.02
LINC00643Q86TS7 CDC42BPA-205ENST00000366769 10855 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 AGO2-205ENST00000519980 3141 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 SERPINH1-202ENST00000524558 3391 ntAPPRIS P1 TSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 THSD7A-202ENST00000423059 10663 ntAPPRIS P2 TSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 MKNK2-213ENST00000591601 3582 ntAPPRIS P4 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 TRIM37-203ENST00000393066 3622 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 CNTROB-202ENST00000563694 3705 ntAPPRIS P3 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 RALGPS2-203ENST00000367634 7512 ntTSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 CACNA1E-205ENST00000367570 9724 ntAPPRIS P3 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 SCN3B-206ENST00000530277 3984 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 SEC16A-206ENST00000431893 6465 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 TRMT12-201ENST00000328599 2207 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 AL031714.1-201ENST00000567829 2926 ntTSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 GNG11-201ENST00000248564 3055 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 BBOF1-201ENST00000394009 3106 ntAPPRIS P2 TSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 MTERF2-207ENST00000552029 3235 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 ZNF213-AS1-204ENST00000572691 3232 ntTSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 TIAM2-206ENST00000456877 3275 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 URGCP-205ENST00000443736 3596 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 FER1L4-208ENST00000611673 3860 ntTSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 AKT1-208ENST00000554581 3916 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 DNMT3B-201ENST00000201963 4255 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 GOLGA4-201ENST00000356847 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 TRMT10B-201ENST00000297994 2281 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 ITPRIP-202ENST00000337478 4093 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 INGX-201ENST00000359239 846 ntBASIC8.67□□□□□ -1.02
LINC00643Q86TS7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 DRC7-202ENST00000360716 3041 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 MFAP3L-201ENST00000361618 6318 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 NR2E1-201ENST00000368983 2612 ntTSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 MED22-202ENST00000371999 987 ntTSL 3 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 ATAT1-205ENST00000376483 2646 ntAPPRIS ALT2 TSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 DDR1-226ENST00000376569 3783 ntAPPRIS P3 TSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 STARP1-201ENST00000397973 869 ntBASIC8.67□□□□□ -1.02
LINC00643Q86TS7 AZGP1P1-201ENST00000411909 902 ntBASIC8.67□□□□□ -1.02
LINC00643Q86TS7 LINC00365-201ENST00000413591 2618 ntTSL 3 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 TCOF1-205ENST00000439160 4644 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 IKZF1-210ENST00000439701 3572 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 CDCA4P2-201ENST00000441182 718 ntBASIC8.67□□□□□ -1.02
LINC00643Q86TS7 ABCD1P5-201ENST00000445663 754 ntBASIC8.67□□□□□ -1.02
LINC00643Q86TS7 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 ZHX1-206ENST00000522655 3357 ntAPPRIS P1 TSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 PENK-208ENST00000523051 772 ntTSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 RPGRIP1-213ENST00000557771 3870 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 DUT-205ENST00000558813 769 ntTSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 LINC02140-202ENST00000566649 2017 ntTSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 RPS15-202ENST00000585665 467 ntTSL 3 BASIC8.67□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms