Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
CDX1P47902 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 FAM86MP-201ENST00000340703 885 ntBASIC11.67□□□□□ -0.54
CDX1P47902 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 BTBD6P1-201ENST00000412176 1267 ntBASIC11.67□□□□□ -0.54
CDX1P47902 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 RPL13AP20-201ENST00000459725 609 ntBASIC11.67□□□□□ -0.54
CDX1P47902 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC11.67□□□□□ -0.54
CDX1P47902 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC11.67□□□□□ -0.54
CDX1P47902 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC11.67□□□□□ -0.54
CDX1P47902 AC026434.2-201ENST00000506094 1078 ntBASIC11.67□□□□□ -0.54
CDX1P47902 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC11.67□□□□□ -0.54
CDX1P47902 HNRNPA1P48-202ENST00000565308 961 ntBASIC11.67□□□□□ -0.54
CDX1P47902 EEF1DP1-201ENST00000585891 896 ntBASIC11.67□□□□□ -0.54
CDX1P47902 OR10B1P-201ENST00000601666 907 ntBASIC11.67□□□□□ -0.54
CDX1P47902 ZACNP1-201ENST00000612259 710 ntBASIC11.67□□□□□ -0.54
CDX1P47902 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC11.67□□□□□ -0.54
CDX1P47902 AC009542.2-202ENST00000619004 1067 ntBASIC11.67□□□□□ -0.54
CDX1P47902 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 DLX4-206ENST00000611342 1662 ntBASIC11.67□□□□□ -0.54
CDX1P47902 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 CLUHP2-201ENST00000426660 1303 ntBASIC11.66□□□□□ -0.54
CDX1P47902 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC11.66□□□□□ -0.54
CDX1P47902 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC11.66□□□□□ -0.54
CDX1P47902 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC11.66□□□□□ -0.54
CDX1P47902 AGER-214ENST00000538695 487 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC11.66□□□□□ -0.54
CDX1P47902 AC106820.3-201ENST00000561653 397 ntBASIC11.66□□□□□ -0.54
CDX1P47902 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC11.66□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms