Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.98□□□□□ -0.17
CDH3P22223 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDH3P22223 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDH3P22223 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDH3P22223 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDH3P22223 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.97□□□□□ -0.17
CDH3P22223 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
CDH3P22223 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
CDH3P22223 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 KRT18P36-201ENST00000411618 1276 ntBASIC13.97□□□□□ -0.17
CDH3P22223 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 ISCA2P1-201ENST00000425548 448 ntBASIC13.97□□□□□ -0.17
CDH3P22223 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC13.97□□□□□ -0.17
CDH3P22223 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.97□□□□□ -0.17
CDH3P22223 NUP210P1-202ENST00000504322 710 ntBASIC13.97□□□□□ -0.17
CDH3P22223 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC13.97□□□□□ -0.17
CDH3P22223 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.97□□□□□ -0.17
CDH3P22223 AC124068.2-201ENST00000569473 1109 ntBASIC13.97□□□□□ -0.17
CDH3P22223 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC13.97□□□□□ -0.17
CDH3P22223 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.97□□□□□ -0.17
CDH3P22223 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.97□□□□□ -0.17
CDH3P22223 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CDH3P22223 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 AC130686.1-201ENST00000622936 2466 ntBASIC13.97□□□□□ -0.17
CDH3P22223 STK26-204ENST00000481105 1835 ntTSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDH3P22223 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CDH3P22223 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
CDH3P22223 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 AC239868.1-201ENST00000369385 493 ntBASIC13.96□□□□□ -0.17
CDH3P22223 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.96□□□□□ -0.17
CDH3P22223 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.96□□□□□ -0.17
CDH3P22223 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDH3P22223 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 AC006335.1-201ENST00000445200 547 ntBASIC13.96□□□□□ -0.17
CDH3P22223 AL596276.2-201ENST00000447525 331 ntBASIC13.96□□□□□ -0.17
CDH3P22223 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC13.96□□□□□ -0.17
CDH3P22223 UPF3AP2-201ENST00000457924 1132 ntBASIC13.96□□□□□ -0.17
CDH3P22223 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.96□□□□□ -0.17
CDH3P22223 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms