Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC14.45□□□□□ -0.1
COL9A1P20849 HLA-DQB3-203ENST00000425319 356 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.45□□□□□ -0.1
COL9A1P20849 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC14.45□□□□□ -0.1
COL9A1P20849 DUXAP7-201ENST00000431038 689 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 TPTE2P1-204ENST00000435256 593 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 AL161932.2-201ENST00000435436 679 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 CCND3P1-201ENST00000438347 580 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.45□□□□□ -0.1
COL9A1P20849 IL12A-205ENST00000480787 863 ntTSL 3 BASIC14.45□□□□□ -0.1
COL9A1P20849 RN7SL375P-201ENST00000492442 298 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 RN7SL767P-201ENST00000493013 295 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.45□□□□□ -0.1
COL9A1P20849 LINC02507-201ENST00000509370 1028 ntTSL 3 BASIC14.45□□□□□ -0.1
COL9A1P20849 AC104117.4-201ENST00000521486 847 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 FAM213AP2-201ENST00000521579 683 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 HERC2P4-202ENST00000564145 683 ntTSL 3 BASIC14.45□□□□□ -0.1
COL9A1P20849 GAS7-216ENST00000583882 553 ntTSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 AC138761.6-201ENST00000583997 1423 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 PSME3-213ENST00000592169 826 ntTSL 3 BASIC14.45□□□□□ -0.1
COL9A1P20849 AC022296.3-201ENST00000608823 403 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 COQ4-204ENST00000608951 781 ntTSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 AL162390.1-201ENST00000622201 1246 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 MYADML-201ENST00000474610 2147 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 AC215219.1-201ENST00000400706 1817 ntBASIC14.45□□□□□ -0.1
COL9A1P20849 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.45□□□□□ -0.1
COL9A1P20849 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL9A1P20849 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.45□□□□□ -0.1
COL9A1P20849 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
COL9A1P20849 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 GOSR2-231ENST00000640007 1425 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 MORN2-205ENST00000410014 750 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 AL512637.1-201ENST00000439523 1231 ntBASIC14.44□□□□□ -0.1
COL9A1P20849 MTND1P26-201ENST00000440488 538 ntBASIC14.44□□□□□ -0.1
COL9A1P20849 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC14.44□□□□□ -0.1
COL9A1P20849 AC025244.1-201ENST00000505930 469 ntTSL 3 BASIC14.44□□□□□ -0.1
COL9A1P20849 AC095040.1-201ENST00000513286 675 ntBASIC14.44□□□□□ -0.1
COL9A1P20849 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC14.44□□□□□ -0.1
COL9A1P20849 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC14.44□□□□□ -0.1
COL9A1P20849 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC14.44□□□□□ -0.1
COL9A1P20849 RN7SL202P-201ENST00000584410 262 ntBASIC14.44□□□□□ -0.1
COL9A1P20849 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC14.44□□□□□ -0.1
COL9A1P20849 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
COL9A1P20849 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.44□□□□□ -0.1
COL9A1P20849 FAM226B-201ENST00000602508 1490 ntBASIC14.44□□□□□ -0.1
COL9A1P20849 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL9A1P20849 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
COL9A1P20849 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms