Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 LINC01521-201ENST00000504184 1943 ntBASIC21.27■■□□□ 1
LRRC42Q9Y546 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
LRRC42Q9Y546 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
LRRC42Q9Y546 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LRRC42Q9Y546 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC42Q9Y546 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 AC080038.3-201ENST00000623346 1952 ntBASIC21.25■□□□□ 0.99
LRRC42Q9Y546 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC42Q9Y546 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
LRRC42Q9Y546 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC42Q9Y546 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC42Q9Y546 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC42Q9Y546 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
LRRC42Q9Y546 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.24■□□□□ 0.99
LRRC42Q9Y546 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 FAM99A-202ENST00000538190 1989 ntBASIC21.23■□□□□ 0.99
LRRC42Q9Y546 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.23■□□□□ 0.99
LRRC42Q9Y546 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRC42Q9Y546 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRRC42Q9Y546 MIR3665-201ENST00000578708 105 ntBASIC21.22■□□□□ 0.99
LRRC42Q9Y546 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRC42Q9Y546 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRC42Q9Y546 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
LRRC42Q9Y546 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
LRRC42Q9Y546 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
LRRC42Q9Y546 AL157384.1-201ENST00000445995 2473 ntBASIC21.21■□□□□ 0.99
LRRC42Q9Y546 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 AC079630.1-202ENST00000618127 1840 ntBASIC21.21■□□□□ 0.99
LRRC42Q9Y546 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC42Q9Y546 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC42Q9Y546 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC42Q9Y546 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC42Q9Y546 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC42Q9Y546 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC42Q9Y546 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC42Q9Y546 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC42Q9Y546 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
LRRC42Q9Y546 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC42Q9Y546 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC42Q9Y546 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.18■□□□□ 0.98
LRRC42Q9Y546 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC42Q9Y546 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC42Q9Y546 AP006261.1-201ENST00000584783 668 ntBASIC21.18■□□□□ 0.98
LRRC42Q9Y546 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.18■□□□□ 0.98
LRRC42Q9Y546 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRC42Q9Y546 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
LRRC42Q9Y546 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC42Q9Y546 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.17■□□□□ 0.98
LRRC42Q9Y546 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.98
LRRC42Q9Y546 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC42Q9Y546 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
LRRC42Q9Y546 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms