Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.88■□□□□ 0.93
USE1Q9NZ43 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
USE1Q9NZ43 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
USE1Q9NZ43 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.88■□□□□ 0.93
USE1Q9NZ43 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USE1Q9NZ43 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USE1Q9NZ43 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USE1Q9NZ43 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.87■□□□□ 0.93
USE1Q9NZ43 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USE1Q9NZ43 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.87■□□□□ 0.93
USE1Q9NZ43 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
USE1Q9NZ43 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
USE1Q9NZ43 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
USE1Q9NZ43 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.87■□□□□ 0.93
USE1Q9NZ43 ECEL1P2-201ENST00000461596 1295 ntBASIC20.87■□□□□ 0.93
USE1Q9NZ43 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USE1Q9NZ43 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USE1Q9NZ43 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USE1Q9NZ43 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USE1Q9NZ43 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.86■□□□□ 0.93
USE1Q9NZ43 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USE1Q9NZ43 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
USE1Q9NZ43 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
USE1Q9NZ43 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USE1Q9NZ43 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USE1Q9NZ43 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USE1Q9NZ43 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.86■□□□□ 0.93
USE1Q9NZ43 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USE1Q9NZ43 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USE1Q9NZ43 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USE1Q9NZ43 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
USE1Q9NZ43 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.85■□□□□ 0.93
USE1Q9NZ43 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USE1Q9NZ43 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
USE1Q9NZ43 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
USE1Q9NZ43 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USE1Q9NZ43 AC016575.1-201ENST00000607026 382 ntBASIC20.85■□□□□ 0.93
USE1Q9NZ43 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USE1Q9NZ43 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USE1Q9NZ43 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USE1Q9NZ43 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.84■□□□□ 0.93
USE1Q9NZ43 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USE1Q9NZ43 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USE1Q9NZ43 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USE1Q9NZ43 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USE1Q9NZ43 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USE1Q9NZ43 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USE1Q9NZ43 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USE1Q9NZ43 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USE1Q9NZ43 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USE1Q9NZ43 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.83■□□□□ 0.93
USE1Q9NZ43 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USE1Q9NZ43 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.93
USE1Q9NZ43 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
USE1Q9NZ43 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
USE1Q9NZ43 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.83■□□□□ 0.93
USE1Q9NZ43 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.83■□□□□ 0.93
USE1Q9NZ43 RAP2CP1-202ENST00000605179 643 ntBASIC20.83■□□□□ 0.93
USE1Q9NZ43 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
USE1Q9NZ43 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
USE1Q9NZ43 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.82■□□□□ 0.92
USE1Q9NZ43 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.82■□□□□ 0.92
USE1Q9NZ43 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USE1Q9NZ43 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
USE1Q9NZ43 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
USE1Q9NZ43 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USE1Q9NZ43 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USE1Q9NZ43 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
USE1Q9NZ43 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USE1Q9NZ43 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.81■□□□□ 0.92
USE1Q9NZ43 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.81■□□□□ 0.92
USE1Q9NZ43 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USE1Q9NZ43 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
USE1Q9NZ43 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USE1Q9NZ43 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USE1Q9NZ43 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.81■□□□□ 0.92
USE1Q9NZ43 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.81■□□□□ 0.92
USE1Q9NZ43 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
USE1Q9NZ43 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.81■□□□□ 0.92
USE1Q9NZ43 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USE1Q9NZ43 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USE1Q9NZ43 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
USE1Q9NZ43 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USE1Q9NZ43 AC139530.1-201ENST00000575312 1977 ntBASIC20.8■□□□□ 0.92
USE1Q9NZ43 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms