Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TTC28Q96AY4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TTC28Q96AY4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23.38■■□□□ 1.33
TTC28Q96AY4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
TTC28Q96AY4 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
TTC28Q96AY4 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
TTC28Q96AY4 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.37■■□□□ 1.33
TTC28Q96AY4 ECEL1P3-201ENST00000427961 737 ntBASIC23.37■■□□□ 1.33
TTC28Q96AY4 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.37■■□□□ 1.33
TTC28Q96AY4 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
TTC28Q96AY4 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
TTC28Q96AY4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
TTC28Q96AY4 AC092118.2-201ENST00000613495 667 ntBASIC23.37■■□□□ 1.33
TTC28Q96AY4 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.37■■□□□ 1.33
TTC28Q96AY4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TTC28Q96AY4 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
TTC28Q96AY4 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TTC28Q96AY4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.36■■□□□ 1.33
TTC28Q96AY4 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
TTC28Q96AY4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
TTC28Q96AY4 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TTC28Q96AY4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.36■■□□□ 1.33
TTC28Q96AY4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
TTC28Q96AY4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.36■■□□□ 1.33
TTC28Q96AY4 RPS2P4-201ENST00000476944 856 ntBASIC23.36■■□□□ 1.33
TTC28Q96AY4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC23.36■■□□□ 1.33
TTC28Q96AY4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TTC28Q96AY4 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
TTC28Q96AY4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.35■■□□□ 1.33
TTC28Q96AY4 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.35■■□□□ 1.33
TTC28Q96AY4 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
TTC28Q96AY4 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
TTC28Q96AY4 DUSP5P2-201ENST00000426873 1033 ntBASIC23.35■■□□□ 1.33
TTC28Q96AY4 DUX4L4-201ENST00000566884 1269 ntBASIC23.35■■□□□ 1.33
TTC28Q96AY4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.35■■□□□ 1.33
TTC28Q96AY4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
TTC28Q96AY4 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.35■■□□□ 1.33
TTC28Q96AY4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
TTC28Q96AY4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
TTC28Q96AY4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TTC28Q96AY4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC23.34■■□□□ 1.33
TTC28Q96AY4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.34■■□□□ 1.33
TTC28Q96AY4 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TTC28Q96AY4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TTC28Q96AY4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC23.34■■□□□ 1.33
TTC28Q96AY4 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
TTC28Q96AY4 AC010331.1-201ENST00000611423 582 ntBASIC23.34■■□□□ 1.33
TTC28Q96AY4 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.34■■□□□ 1.33
TTC28Q96AY4 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC23.34■■□□□ 1.33
TTC28Q96AY4 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
TTC28Q96AY4 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
TTC28Q96AY4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
TTC28Q96AY4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
TTC28Q96AY4 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.33■■□□□ 1.33
TTC28Q96AY4 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC23.33■■□□□ 1.33
TTC28Q96AY4 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
TTC28Q96AY4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.33■■□□□ 1.32
TTC28Q96AY4 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
TTC28Q96AY4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC23.33■■□□□ 1.32
TTC28Q96AY4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
TTC28Q96AY4 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
TTC28Q96AY4 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.33■■□□□ 1.32
TTC28Q96AY4 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.33■■□□□ 1.32
TTC28Q96AY4 AL121832.2-201ENST00000610979 668 ntBASIC23.33■■□□□ 1.32
TTC28Q96AY4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC23.33■■□□□ 1.32
TTC28Q96AY4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
TTC28Q96AY4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23.32■■□□□ 1.32
TTC28Q96AY4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
TTC28Q96AY4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
TTC28Q96AY4 SLC7A5P1-201ENST00000568957 537 ntBASIC23.32■■□□□ 1.32
TTC28Q96AY4 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC23.31■■□□□ 1.32
TTC28Q96AY4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TTC28Q96AY4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TTC28Q96AY4 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TTC28Q96AY4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TTC28Q96AY4 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
TTC28Q96AY4 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
TTC28Q96AY4 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TTC28Q96AY4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC23.31■■□□□ 1.32
TTC28Q96AY4 AF201337.1-201ENST00000520239 748 ntBASIC23.31■■□□□ 1.32
TTC28Q96AY4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TTC28Q96AY4 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TTC28Q96AY4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.3■■□□□ 1.32
TTC28Q96AY4 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
TTC28Q96AY4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TTC28Q96AY4 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.3■■□□□ 1.32
TTC28Q96AY4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.3■■□□□ 1.32
TTC28Q96AY4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.3■■□□□ 1.32
TTC28Q96AY4 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
TTC28Q96AY4 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TTC28Q96AY4 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.29■■□□□ 1.32
TTC28Q96AY4 AC008550.1-201ENST00000511500 884 ntBASIC23.29■■□□□ 1.32
TTC28Q96AY4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC23.29■■□□□ 1.32
TTC28Q96AY4 AC005181.1-201ENST00000604782 1256 ntBASIC23.29■■□□□ 1.32
TTC28Q96AY4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC23.29■■□□□ 1.32
TTC28Q96AY4 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TTC28Q96AY4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
TTC28Q96AY4 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TTC28Q96AY4 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.28■■□□□ 1.32
TTC28Q96AY4 AC131274.2-201ENST00000580697 1507 ntBASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms