Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.66■■□□□ 1.22
HMGB4Q8WW32 YBX1P1-201ENST00000445822 960 ntBASIC22.66■■□□□ 1.22
HMGB4Q8WW32 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.66■■□□□ 1.22
HMGB4Q8WW32 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.66■■□□□ 1.22
HMGB4Q8WW32 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
HMGB4Q8WW32 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.66■■□□□ 1.22
HMGB4Q8WW32 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.65■■□□□ 1.22
HMGB4Q8WW32 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB4Q8WW32 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC22.65■■□□□ 1.22
HMGB4Q8WW32 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC22.65■■□□□ 1.22
HMGB4Q8WW32 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC22.65■■□□□ 1.22
HMGB4Q8WW32 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC22.65■■□□□ 1.22
HMGB4Q8WW32 AL031602.1-201ENST00000633169 911 ntBASIC22.65■■□□□ 1.22
HMGB4Q8WW32 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.65■■□□□ 1.22
HMGB4Q8WW32 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.64■■□□□ 1.22
HMGB4Q8WW32 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC22.64■■□□□ 1.21
HMGB4Q8WW32 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.64■■□□□ 1.21
HMGB4Q8WW32 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
HMGB4Q8WW32 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HMGB4Q8WW32 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.64■■□□□ 1.21
HMGB4Q8WW32 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
HMGB4Q8WW32 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.63■■□□□ 1.21
HMGB4Q8WW32 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB4Q8WW32 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
HMGB4Q8WW32 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB4Q8WW32 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.63■■□□□ 1.21
HMGB4Q8WW32 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB4Q8WW32 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.62■■□□□ 1.21
HMGB4Q8WW32 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC22.62■■□□□ 1.21
HMGB4Q8WW32 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB4Q8WW32 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC22.62■■□□□ 1.21
HMGB4Q8WW32 IKBKGP1-201ENST00000612193 1073 ntBASIC22.62■■□□□ 1.21
HMGB4Q8WW32 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC22.62■■□□□ 1.21
HMGB4Q8WW32 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC22.62■■□□□ 1.21
HMGB4Q8WW32 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
HMGB4Q8WW32 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 IGHV3-19-201ENST00000521488 291 ntBASIC22.61■■□□□ 1.21
HMGB4Q8WW32 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 MIR6084-201ENST00000622012 110 ntBASIC22.61■■□□□ 1.21
HMGB4Q8WW32 AC022211.4-201ENST00000625094 2161 ntBASIC22.61■■□□□ 1.21
HMGB4Q8WW32 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 AC133637.1-201ENST00000624115 1537 ntBASIC22.61■■□□□ 1.21
HMGB4Q8WW32 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB4Q8WW32 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 KRT18P5-201ENST00000436075 1291 ntBASIC22.6■■□□□ 1.21
HMGB4Q8WW32 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 AC022517.1-201ENST00000592429 346 ntBASIC22.6■■□□□ 1.21
HMGB4Q8WW32 AL358852.1-201ENST00000623174 1268 ntBASIC22.6■■□□□ 1.21
HMGB4Q8WW32 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB4Q8WW32 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB4Q8WW32 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
HMGB4Q8WW32 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.58■■□□□ 1.21
HMGB4Q8WW32 DUX4L2-201ENST00000561772 1275 ntBASIC22.58■■□□□ 1.21
HMGB4Q8WW32 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
HMGB4Q8WW32 RAB43-208ENST00000615093 783 ntTSL 5 BASIC22.58■■□□□ 1.21
HMGB4Q8WW32 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.58■■□□□ 1.21
HMGB4Q8WW32 DUX4L6-201ENST00000626483 1275 ntBASIC22.58■■□□□ 1.21
HMGB4Q8WW32 DUX4L1-201ENST00000627662 1275 ntBASIC22.58■■□□□ 1.21
HMGB4Q8WW32 DUX4L8-201ENST00000629013 1275 ntBASIC22.58■■□□□ 1.21
HMGB4Q8WW32 DUX4L3-201ENST00000630187 1275 ntBASIC22.58■■□□□ 1.21
HMGB4Q8WW32 DUX4L7-201ENST00000630678 1275 ntBASIC22.58■■□□□ 1.21
HMGB4Q8WW32 DUX4L5-201ENST00000630834 1275 ntBASIC22.58■■□□□ 1.21
HMGB4Q8WW32 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HMGB4Q8WW32 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
HMGB4Q8WW32 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.58■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms