Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.83■□□□□ 0.93
BEST3Q8N1M1 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
BEST3Q8N1M1 AC006455.2-201ENST00000429931 906 ntBASIC20.83■□□□□ 0.93
BEST3Q8N1M1 AF213884.3-201ENST00000563833 479 ntBASIC20.83■□□□□ 0.93
BEST3Q8N1M1 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
BEST3Q8N1M1 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
BEST3Q8N1M1 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BEST3Q8N1M1 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BEST3Q8N1M1 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BEST3Q8N1M1 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.83■□□□□ 0.92
BEST3Q8N1M1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.82■□□□□ 0.92
BEST3Q8N1M1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
BEST3Q8N1M1 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
BEST3Q8N1M1 ZNRF2P3-201ENST00000424200 374 ntBASIC20.82■□□□□ 0.92
BEST3Q8N1M1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
BEST3Q8N1M1 AC009086.3-201ENST00000623486 1008 ntBASIC20.82■□□□□ 0.92
BEST3Q8N1M1 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BEST3Q8N1M1 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.82■□□□□ 0.92
BEST3Q8N1M1 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 AL138724.1-201ENST00000606771 1088 ntBASIC20.81■□□□□ 0.92
BEST3Q8N1M1 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BEST3Q8N1M1 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
BEST3Q8N1M1 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
BEST3Q8N1M1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.8■□□□□ 0.92
BEST3Q8N1M1 AP001330.3-201ENST00000520123 633 ntBASIC20.8■□□□□ 0.92
BEST3Q8N1M1 AC011298.3-201ENST00000615796 283 ntBASIC20.8■□□□□ 0.92
BEST3Q8N1M1 AL136967.2-201ENST00000623968 743 ntBASIC20.8■□□□□ 0.92
BEST3Q8N1M1 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
BEST3Q8N1M1 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BEST3Q8N1M1 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BEST3Q8N1M1 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.8■□□□□ 0.92
BEST3Q8N1M1 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
BEST3Q8N1M1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 MIR939-201ENST00000401314 82 ntBASIC20.79■□□□□ 0.92
BEST3Q8N1M1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
BEST3Q8N1M1 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.78■□□□□ 0.92
BEST3Q8N1M1 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.78■□□□□ 0.92
BEST3Q8N1M1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
BEST3Q8N1M1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.78■□□□□ 0.92
BEST3Q8N1M1 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.78■□□□□ 0.92
BEST3Q8N1M1 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
BEST3Q8N1M1 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.77■□□□□ 0.91
BEST3Q8N1M1 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
BEST3Q8N1M1 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BEST3Q8N1M1 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BEST3Q8N1M1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
BEST3Q8N1M1 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BEST3Q8N1M1 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
BEST3Q8N1M1 AC105265.2-201ENST00000467189 838 ntBASIC20.76■□□□□ 0.91
BEST3Q8N1M1 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
BEST3Q8N1M1 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
BEST3Q8N1M1 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
BEST3Q8N1M1 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 AC091305.1-201ENST00000479476 895 ntBASIC20.75■□□□□ 0.91
BEST3Q8N1M1 MIR3181-201ENST00000578512 73 ntBASIC20.75■□□□□ 0.91
BEST3Q8N1M1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.75■□□□□ 0.91
BEST3Q8N1M1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
BEST3Q8N1M1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
BEST3Q8N1M1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BEST3Q8N1M1 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms