Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC25.85■■□□□ 1.73
SH3RF1Q7Z6J0 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.84■■□□□ 1.73
SH3RF1Q7Z6J0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
SH3RF1Q7Z6J0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SH3RF1Q7Z6J0 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SH3RF1Q7Z6J0 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SH3RF1Q7Z6J0 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SH3RF1Q7Z6J0 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC25.84■■□□□ 1.73
SH3RF1Q7Z6J0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
SH3RF1Q7Z6J0 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
SH3RF1Q7Z6J0 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.72
SH3RF1Q7Z6J0 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SH3RF1Q7Z6J0 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.81■■□□□ 1.72
SH3RF1Q7Z6J0 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SH3RF1Q7Z6J0 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SH3RF1Q7Z6J0 AC091305.1-201ENST00000479476 895 ntBASIC25.81■■□□□ 1.72
SH3RF1Q7Z6J0 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC25.81■■□□□ 1.72
SH3RF1Q7Z6J0 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SH3RF1Q7Z6J0 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
SH3RF1Q7Z6J0 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.81■■□□□ 1.72
SH3RF1Q7Z6J0 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SH3RF1Q7Z6J0 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 AL161729.1-201ENST00000604104 1402 ntBASIC25.8■■□□□ 1.72
SH3RF1Q7Z6J0 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC25.79■■□□□ 1.72
SH3RF1Q7Z6J0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.79■■□□□ 1.72
SH3RF1Q7Z6J0 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SH3RF1Q7Z6J0 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.79■■□□□ 1.72
SH3RF1Q7Z6J0 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
SH3RF1Q7Z6J0 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.79■■□□□ 1.72
SH3RF1Q7Z6J0 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 MIR4767-201ENST00000582827 78 ntBASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SH3RF1Q7Z6J0 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 CA15P2-201ENST00000611168 834 ntBASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 DUSP8P5-201ENST00000422884 1815 ntBASIC25.77■■□□□ 1.72
SH3RF1Q7Z6J0 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.72
SH3RF1Q7Z6J0 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 AC004448.1-201ENST00000458332 883 ntBASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
SH3RF1Q7Z6J0 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms