Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 IGHV3-19-201ENST00000521488 291 ntBASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.65■□□□□ 0.58
CSPG4Q6UVK1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CSPG4Q6UVK1 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 KRT18P61-201ENST00000585825 1298 ntBASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 pRNA.6-201ENST00000610482 90 ntBASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 pRNA.5-201ENST00000612139 90 ntBASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 pRNA.11-201ENST00000618423 90 ntBASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 pRNA.13-201ENST00000619112 90 ntBASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 AC009086.3-201ENST00000623486 1008 ntBASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CSPG4Q6UVK1 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.63■□□□□ 0.57
CSPG4Q6UVK1 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CSPG4Q6UVK1 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CSPG4Q6UVK1 AC016769.1-201ENST00000409132 1010 ntBASIC18.62■□□□□ 0.57
CSPG4Q6UVK1 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.62■□□□□ 0.57
CSPG4Q6UVK1 AL354811.1-201ENST00000610286 706 ntBASIC18.62■□□□□ 0.57
CSPG4Q6UVK1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
CSPG4Q6UVK1 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.62■□□□□ 0.57
CSPG4Q6UVK1 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 AC093827.2-201ENST00000512654 315 ntBASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 TMEM202-AS1-202ENST00000565181 2325 ntBASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CSPG4Q6UVK1 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms