Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC40Q4G0X9 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC24.69■■□□□ 1.54
CCDC40Q4G0X9 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
CCDC40Q4G0X9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC40Q4G0X9 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC40Q4G0X9 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC40Q4G0X9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC40Q4G0X9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
CCDC40Q4G0X9 AC021242.3-201ENST00000607598 1377 ntBASIC24.68■■□□□ 1.54
CCDC40Q4G0X9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC40Q4G0X9 RARRES2P1-201ENST00000474487 481 ntBASIC24.68■■□□□ 1.54
CCDC40Q4G0X9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.68■■□□□ 1.54
CCDC40Q4G0X9 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC40Q4G0X9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC24.67■■□□□ 1.54
CCDC40Q4G0X9 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
CCDC40Q4G0X9 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CCDC40Q4G0X9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
CCDC40Q4G0X9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
CCDC40Q4G0X9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.67■■□□□ 1.54
CCDC40Q4G0X9 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CCDC40Q4G0X9 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 AC079630.1-202ENST00000618127 1840 ntBASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC40Q4G0X9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC40Q4G0X9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC40Q4G0X9 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24.64■■□□□ 1.54
CCDC40Q4G0X9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC40Q4G0X9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC40Q4G0X9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC40Q4G0X9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
CCDC40Q4G0X9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC40Q4G0X9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC40Q4G0X9 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC40Q4G0X9 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC40Q4G0X9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC24.63■■□□□ 1.53
CCDC40Q4G0X9 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC40Q4G0X9 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC40Q4G0X9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC40Q4G0X9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
CCDC40Q4G0X9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC40Q4G0X9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 KRT125P-201ENST00000546827 989 ntBASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC40Q4G0X9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC40Q4G0X9 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms