Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC27.88■■■□□ 2.05
CCDC88AQ3V6T2 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC27.87■■■□□ 2.05
CCDC88AQ3V6T2 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
CCDC88AQ3V6T2 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC27.86■■■□□ 2.05
CCDC88AQ3V6T2 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
CCDC88AQ3V6T2 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
CCDC88AQ3V6T2 NT5C3AP1-201ENST00000394500 1012 ntBASIC27.86■■■□□ 2.05
CCDC88AQ3V6T2 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC27.86■■■□□ 2.05
CCDC88AQ3V6T2 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 GTSE1-AS1-202ENST00000623117 1518 ntBASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 VGF-203ENST00000611537 1622 ntTSL 5 BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC88AQ3V6T2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC27.84■■■□□ 2.05
CCDC88AQ3V6T2 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
CCDC88AQ3V6T2 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
CCDC88AQ3V6T2 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
CCDC88AQ3V6T2 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
CCDC88AQ3V6T2 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC27.84■■■□□ 2.05
CCDC88AQ3V6T2 CD37-213ENST00000598095 1598 ntTSL 2 BASIC27.84■■■□□ 2.05
CCDC88AQ3V6T2 LSR-205ENST00000427250 1606 ntTSL 2 BASIC27.83■■■□□ 2.05
CCDC88AQ3V6T2 USF2-207ENST00000595068 1612 ntTSL 5 BASIC27.83■■■□□ 2.05
CCDC88AQ3V6T2 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC27.83■■■□□ 2.05
CCDC88AQ3V6T2 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC27.83■■■□□ 2.04
CCDC88AQ3V6T2 GXYLT1P5-201ENST00000614548 1189 ntBASIC27.83■■■□□ 2.04
CCDC88AQ3V6T2 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC88AQ3V6T2 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC88AQ3V6T2 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC88AQ3V6T2 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC88AQ3V6T2 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC88AQ3V6T2 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC27.82■■■□□ 2.04
CCDC88AQ3V6T2 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC88AQ3V6T2 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 AC073111.5-205ENST00000641717 521 ntBASIC27.81■■■□□ 2.04
CCDC88AQ3V6T2 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC27.8■■■□□ 2.04
CCDC88AQ3V6T2 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.79■■■□□ 2.04
CCDC88AQ3V6T2 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC27.79■■■□□ 2.04
CCDC88AQ3V6T2 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
CCDC88AQ3V6T2 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
CCDC88AQ3V6T2 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC27.79■■■□□ 2.04
CCDC88AQ3V6T2 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
CCDC88AQ3V6T2 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC27.79■■■□□ 2.04
CCDC88AQ3V6T2 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC27.79■■■□□ 2.04
CCDC88AQ3V6T2 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
CCDC88AQ3V6T2 AC010525.1-201ENST00000585559 441 ntBASIC27.78■■■□□ 2.04
CCDC88AQ3V6T2 AC104771.1-201ENST00000603335 964 ntBASIC27.78■■■□□ 2.04
CCDC88AQ3V6T2 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC88AQ3V6T2 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC27.78■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms