Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 SNX5-217ENST00000606557 1087 ntBASIC21.66■■□□□ 1.06
HMGCS1Q01581 AL031848.2-201ENST00000607670 837 ntBASIC21.66■■□□□ 1.06
HMGCS1Q01581 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS1Q01581 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGCS1Q01581 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS1Q01581 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
HMGCS1Q01581 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGCS1Q01581 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
HMGCS1Q01581 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS1Q01581 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.65■■□□□ 1.06
HMGCS1Q01581 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.65■■□□□ 1.06
HMGCS1Q01581 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS1Q01581 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS1Q01581 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS1Q01581 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS1Q01581 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGCS1Q01581 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
HMGCS1Q01581 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS1Q01581 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.64■■□□□ 1.06
HMGCS1Q01581 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGCS1Q01581 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGCS1Q01581 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGCS1Q01581 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
HMGCS1Q01581 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS1Q01581 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGCS1Q01581 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS1Q01581 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.64■■□□□ 1.05
HMGCS1Q01581 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGCS1Q01581 AC233723.2-201ENST00000623798 2106 ntBASIC21.64■■□□□ 1.05
HMGCS1Q01581 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGCS1Q01581 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
HMGCS1Q01581 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS1Q01581 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS1Q01581 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
HMGCS1Q01581 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS1Q01581 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS1Q01581 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.63■■□□□ 1.05
HMGCS1Q01581 AC137630.3-201ENST00000607245 391 ntBASIC21.63■■□□□ 1.05
HMGCS1Q01581 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS1Q01581 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGCS1Q01581 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGCS1Q01581 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGCS1Q01581 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGCS1Q01581 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGCS1Q01581 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGCS1Q01581 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGCS1Q01581 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.62■■□□□ 1.05
HMGCS1Q01581 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
HMGCS1Q01581 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGCS1Q01581 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGCS1Q01581 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGCS1Q01581 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS1Q01581 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS1Q01581 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS1Q01581 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS1Q01581 RARRES2P1-201ENST00000474487 481 ntBASIC21.61■■□□□ 1.05
HMGCS1Q01581 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
HMGCS1Q01581 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS1Q01581 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS1Q01581 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
HMGCS1Q01581 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGCS1Q01581 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
HMGCS1Q01581 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGCS1Q01581 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGCS1Q01581 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGCS1Q01581 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS1Q01581 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS1Q01581 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS1Q01581 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGCS1Q01581 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGCS1Q01581 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGCS1Q01581 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS1Q01581 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS1Q01581 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGCS1Q01581 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGCS1Q01581 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS1Q01581 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS1Q01581 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS1Q01581 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS1Q01581 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS1Q01581 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS1Q01581 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS1Q01581 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS1Q01581 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGCS1Q01581 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.59■■□□□ 1.05
HMGCS1Q01581 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.59■■□□□ 1.05
HMGCS1Q01581 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
HMGCS1Q01581 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS1Q01581 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGCS1Q01581 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGCS1Q01581 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HMGCS1Q01581 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.58■■□□□ 1.05
HMGCS1Q01581 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGCS1Q01581 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGCS1Q01581 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGCS1Q01581 AC079834.2-201ENST00000609776 1949 ntBASIC21.58■■□□□ 1.04
HMGCS1Q01581 AL117328.2-201ENST00000624617 1940 ntBASIC21.58■■□□□ 1.04
HMGCS1Q01581 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HMGCS1Q01581 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS1Q01581 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms