Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN1P58418 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CLRN1P58418 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN1P58418 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.05■□□□□ 0.8
CLRN1P58418 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.05■□□□□ 0.8
CLRN1P58418 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLRN1P58418 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN1P58418 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN1P58418 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN1P58418 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.04■□□□□ 0.8
CLRN1P58418 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN1P58418 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.04■□□□□ 0.8
CLRN1P58418 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CLRN1P58418 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN1P58418 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.04■□□□□ 0.8
CLRN1P58418 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.04■□□□□ 0.8
CLRN1P58418 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.04■□□□□ 0.8
CLRN1P58418 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN1P58418 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN1P58418 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLRN1P58418 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.04■□□□□ 0.8
CLRN1P58418 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.03■□□□□ 0.8
CLRN1P58418 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLRN1P58418 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLRN1P58418 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLRN1P58418 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLRN1P58418 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CLRN1P58418 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
CLRN1P58418 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLRN1P58418 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLRN1P58418 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLRN1P58418 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CLRN1P58418 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLRN1P58418 AC010997.5-201ENST00000609182 354 ntBASIC20.02■□□□□ 0.8
CLRN1P58418 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLRN1P58418 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLRN1P58418 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLRN1P58418 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CLRN1P58418 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLRN1P58418 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.02■□□□□ 0.79
CLRN1P58418 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.01■□□□□ 0.79
CLRN1P58418 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLRN1P58418 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.01■□□□□ 0.79
CLRN1P58418 AL035685.1-201ENST00000636663 812 ntBASIC20.01■□□□□ 0.79
CLRN1P58418 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.01■□□□□ 0.79
CLRN1P58418 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20■□□□□ 0.79
CLRN1P58418 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CLRN1P58418 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20■□□□□ 0.79
CLRN1P58418 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CLRN1P58418 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20■□□□□ 0.79
CLRN1P58418 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20■□□□□ 0.79
CLRN1P58418 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CLRN1P58418 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20■□□□□ 0.79
CLRN1P58418 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN1P58418 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN1P58418 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN1P58418 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
CLRN1P58418 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.99■□□□□ 0.79
CLRN1P58418 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.99■□□□□ 0.79
CLRN1P58418 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.99■□□□□ 0.79
CLRN1P58418 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CLRN1P58418 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.99■□□□□ 0.79
CLRN1P58418 AC079630.1-202ENST00000618127 1840 ntBASIC19.99■□□□□ 0.79
CLRN1P58418 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN1P58418 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN1P58418 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN1P58418 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN1P58418 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLRN1P58418 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.98■□□□□ 0.79
CLRN1P58418 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.98■□□□□ 0.79
CLRN1P58418 DUSP8P3-201ENST00000399571 1760 ntBASIC19.98■□□□□ 0.79
CLRN1P58418 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.98■□□□□ 0.79
CLRN1P58418 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.98■□□□□ 0.79
CLRN1P58418 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.97■□□□□ 0.79
CLRN1P58418 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN1P58418 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLRN1P58418 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.97■□□□□ 0.79
CLRN1P58418 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms