Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC31.65■■■□□ 2.66
MSH6P52701 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
MSH6P52701 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC31.65■■■□□ 2.66
MSH6P52701 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
MSH6P52701 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
MSH6P52701 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
MSH6P52701 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
MSH6P52701 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
MSH6P52701 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
MSH6P52701 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC31.64■■■□□ 2.66
MSH6P52701 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC31.63■■■□□ 2.65
MSH6P52701 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
MSH6P52701 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
MSH6P52701 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC31.63■■■□□ 2.65
MSH6P52701 CROCCP5-201ENST00000436658 830 ntBASIC31.63■■■□□ 2.65
MSH6P52701 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC31.63■■■□□ 2.65
MSH6P52701 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC31.63■■■□□ 2.65
MSH6P52701 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
MSH6P52701 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
MSH6P52701 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC31.63■■■□□ 2.65
MSH6P52701 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC31.63■■■□□ 2.65
MSH6P52701 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC31.63■■■□□ 2.65
MSH6P52701 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC31.63■■■□□ 2.65
MSH6P52701 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
MSH6P52701 STX7-201ENST00000367937 1090 ntTSL 5 BASIC31.62■■■□□ 2.65
MSH6P52701 AP005435.1-201ENST00000529293 1178 ntBASIC31.62■■■□□ 2.65
MSH6P52701 DBI-210ENST00000542275 757 ntTSL 5 BASIC31.62■■■□□ 2.65
MSH6P52701 GALNS-213ENST00000569433 723 ntTSL 3 BASIC31.62■■■□□ 2.65
MSH6P52701 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC31.62■■■□□ 2.65
MSH6P52701 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC31.62■■■□□ 2.65
MSH6P52701 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
MSH6P52701 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
MSH6P52701 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
MSH6P52701 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
MSH6P52701 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC31.61■■■□□ 2.65
MSH6P52701 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC31.61■■■□□ 2.65
MSH6P52701 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC31.61■■■□□ 2.65
MSH6P52701 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC31.61■■■□□ 2.65
MSH6P52701 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
MSH6P52701 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
MSH6P52701 BID-214ENST00000617586 542 ntTSL 5 BASIC31.6■■■□□ 2.65
MSH6P52701 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC31.6■■■□□ 2.65
MSH6P52701 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC31.6■■■□□ 2.65
MSH6P52701 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
MSH6P52701 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
MSH6P52701 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
MSH6P52701 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC31.59■■■□□ 2.65
MSH6P52701 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC31.59■■■□□ 2.65
MSH6P52701 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
MSH6P52701 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
MSH6P52701 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
MSH6P52701 CD99P1-205ENST00000527459 561 ntBASIC31.58■■■□□ 2.65
MSH6P52701 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
MSH6P52701 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
MSH6P52701 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.58■■■□□ 2.65
MSH6P52701 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
MSH6P52701 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.58■■■□□ 2.65
MSH6P52701 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC31.57■■■□□ 2.65
MSH6P52701 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC31.57■■■□□ 2.64
MSH6P52701 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
MSH6P52701 NCF1B-203ENST00000435988 1254 ntBASIC31.57■■■□□ 2.64
MSH6P52701 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC31.57■■■□□ 2.64
MSH6P52701 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
MSH6P52701 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC31.57■■■□□ 2.64
MSH6P52701 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.57■■■□□ 2.64
MSH6P52701 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
MSH6P52701 AC133637.1-201ENST00000624115 1537 ntBASIC31.57■■■□□ 2.64
MSH6P52701 USF2-207ENST00000595068 1612 ntTSL 5 BASIC31.57■■■□□ 2.64
MSH6P52701 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
MSH6P52701 AC091060.1-201ENST00000623524 1766 ntBASIC31.57■■■□□ 2.64
MSH6P52701 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
MSH6P52701 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
MSH6P52701 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
MSH6P52701 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
MSH6P52701 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC31.56■■■□□ 2.64
MSH6P52701 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
MSH6P52701 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
MSH6P52701 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC31.56■■■□□ 2.64
MSH6P52701 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC31.56■■■□□ 2.64
MSH6P52701 AC010525.1-201ENST00000585559 441 ntBASIC31.56■■■□□ 2.64
MSH6P52701 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
MSH6P52701 AC010501.1-201ENST00000606270 1962 ntBASIC31.55■■■□□ 2.64
MSH6P52701 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC31.55■■■□□ 2.64
MSH6P52701 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC31.55■■■□□ 2.64
MSH6P52701 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
MSH6P52701 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
MSH6P52701 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC31.54■■■□□ 2.64
MSH6P52701 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
MSH6P52701 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC31.54■■■□□ 2.64
MSH6P52701 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
MSH6P52701 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.53■■■□□ 2.64
MSH6P52701 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
MSH6P52701 OR2I1P-207ENST00000453522 948 ntBASIC31.53■■■□□ 2.64
MSH6P52701 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
MSH6P52701 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC31.53■■■□□ 2.64
MSH6P52701 AL499627.2-201ENST00000606283 725 ntBASIC31.53■■■□□ 2.64
MSH6P52701 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC31.53■■■□□ 2.64
MSH6P52701 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
MSH6P52701 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
MSH6P52701 WWOX-218ENST00000627394 894 ntTSL 5 BASIC31.52■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms