Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CX3CR1P49238 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
CX3CR1P49238 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CX3CR1P49238 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CX3CR1P49238 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CX3CR1P49238 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CX3CR1P49238 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CX3CR1P49238 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CX3CR1P49238 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CX3CR1P49238 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
CX3CR1P49238 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
CX3CR1P49238 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CX3CR1P49238 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.7■□□□□ 0.74
CX3CR1P49238 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.7■□□□□ 0.74
CX3CR1P49238 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.7■□□□□ 0.74
CX3CR1P49238 SNX5-217ENST00000606557 1087 ntBASIC19.7■□□□□ 0.74
CX3CR1P49238 AC137630.3-201ENST00000607245 391 ntBASIC19.7■□□□□ 0.74
CX3CR1P49238 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.7■□□□□ 0.74
CX3CR1P49238 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CX3CR1P49238 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CX3CR1P49238 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CX3CR1P49238 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CX3CR1P49238 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CX3CR1P49238 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CX3CR1P49238 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CX3CR1P49238 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.69■□□□□ 0.74
CX3CR1P49238 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.69■□□□□ 0.74
CX3CR1P49238 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.69■□□□□ 0.74
CX3CR1P49238 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CX3CR1P49238 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.69■□□□□ 0.74
CX3CR1P49238 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CX3CR1P49238 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.69■□□□□ 0.74
CX3CR1P49238 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.69■□□□□ 0.74
CX3CR1P49238 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CX3CR1P49238 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CX3CR1P49238 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CX3CR1P49238 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CX3CR1P49238 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.68■□□□□ 0.74
CX3CR1P49238 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CX3CR1P49238 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CX3CR1P49238 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CX3CR1P49238 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CX3CR1P49238 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.68■□□□□ 0.74
CX3CR1P49238 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CX3CR1P49238 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CX3CR1P49238 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CX3CR1P49238 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.68■□□□□ 0.74
CX3CR1P49238 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CX3CR1P49238 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CX3CR1P49238 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CX3CR1P49238 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CX3CR1P49238 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CX3CR1P49238 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CX3CR1P49238 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.66■□□□□ 0.74
CX3CR1P49238 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.66■□□□□ 0.74
CX3CR1P49238 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CR1P49238 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.66■□□□□ 0.74
CX3CR1P49238 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.66■□□□□ 0.74
CX3CR1P49238 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.66■□□□□ 0.74
CX3CR1P49238 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.66■□□□□ 0.74
CX3CR1P49238 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.66■□□□□ 0.74
CX3CR1P49238 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CR1P49238 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.66■□□□□ 0.74
CX3CR1P49238 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.66■□□□□ 0.74
CX3CR1P49238 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CR1P49238 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CR1P49238 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CX3CR1P49238 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CR1P49238 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CR1P49238 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CX3CR1P49238 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CR1P49238 AC079630.1-202ENST00000618127 1840 ntBASIC19.65■□□□□ 0.74
CX3CR1P49238 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CR1P49238 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CR1P49238 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CR1P49238 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CR1P49238 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CR1P49238 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.65■□□□□ 0.74
CX3CR1P49238 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.65■□□□□ 0.74
CX3CR1P49238 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
CX3CR1P49238 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.65■□□□□ 0.74
CX3CR1P49238 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CR1P49238 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CR1P49238 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CX3CR1P49238 BX664725.1-201ENST00000438252 379 ntBASIC19.64■□□□□ 0.73
CX3CR1P49238 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CX3CR1P49238 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.64■□□□□ 0.73
CX3CR1P49238 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
CX3CR1P49238 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
CX3CR1P49238 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CX3CR1P49238 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CX3CR1P49238 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CX3CR1P49238 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CX3CR1P49238 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.63■□□□□ 0.73
CX3CR1P49238 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.63■□□□□ 0.73
CX3CR1P49238 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CX3CR1P49238 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CX3CR1P49238 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CX3CR1P49238 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.63■□□□□ 0.73
CX3CR1P49238 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms