Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
SCN1AP35498 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
SCN1AP35498 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SCN1AP35498 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.13■■□□□ 1.45
SCN1AP35498 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SCN1AP35498 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
SCN1AP35498 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SCN1AP35498 SYT6-210ENST00000641643 1587 ntBASIC24.12■■□□□ 1.45
SCN1AP35498 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
SCN1AP35498 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.12■■□□□ 1.45
SCN1AP35498 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
SCN1AP35498 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.12■■□□□ 1.45
SCN1AP35498 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.12■■□□□ 1.45
SCN1AP35498 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
SCN1AP35498 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SCN1AP35498 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.11■■□□□ 1.45
SCN1AP35498 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SCN1AP35498 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.11■■□□□ 1.45
SCN1AP35498 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.11■■□□□ 1.45
SCN1AP35498 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.11■■□□□ 1.45
SCN1AP35498 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.11■■□□□ 1.45
SCN1AP35498 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.11■■□□□ 1.45
SCN1AP35498 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC24.11■■□□□ 1.45
SCN1AP35498 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SCN1AP35498 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SCN1AP35498 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
SCN1AP35498 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SCN1AP35498 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SCN1AP35498 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SCN1AP35498 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.1■■□□□ 1.45
SCN1AP35498 AC144652.1-201ENST00000609974 1624 ntBASIC24.1■■□□□ 1.45
SCN1AP35498 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.1■■□□□ 1.45
SCN1AP35498 AC011298.3-201ENST00000615796 283 ntBASIC24.1■■□□□ 1.45
SCN1AP35498 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
SCN1AP35498 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.09■■□□□ 1.45
SCN1AP35498 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC24.09■■□□□ 1.45
SCN1AP35498 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
SCN1AP35498 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SCN1AP35498 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SCN1AP35498 PBX2P1-201ENST00000493219 1291 ntBASIC24.09■■□□□ 1.45
SCN1AP35498 AC133561.4-201ENST00000566112 224 ntBASIC24.09■■□□□ 1.45
SCN1AP35498 AL136162.1-201ENST00000607711 1078 ntBASIC24.09■■□□□ 1.45
SCN1AP35498 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
SCN1AP35498 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.09■■□□□ 1.45
SCN1AP35498 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC24.09■■□□□ 1.45
SCN1AP35498 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SCN1AP35498 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
SCN1AP35498 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC24.08■■□□□ 1.45
SCN1AP35498 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
SCN1AP35498 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC24.08■■□□□ 1.45
SCN1AP35498 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
SCN1AP35498 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
SCN1AP35498 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.08■■□□□ 1.45
SCN1AP35498 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
SCN1AP35498 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
SCN1AP35498 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.44
SCN1AP35498 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
SCN1AP35498 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.08■■□□□ 1.44
SCN1AP35498 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
SCN1AP35498 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SCN1AP35498 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.07■■□□□ 1.44
SCN1AP35498 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC24.07■■□□□ 1.44
SCN1AP35498 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
SCN1AP35498 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
SCN1AP35498 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.07■■□□□ 1.44
SCN1AP35498 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC24.06■■□□□ 1.44
SCN1AP35498 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
SCN1AP35498 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.06■■□□□ 1.44
SCN1AP35498 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC24.06■■□□□ 1.44
SCN1AP35498 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
SCN1AP35498 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC24.06■■□□□ 1.44
SCN1AP35498 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC24.06■■□□□ 1.44
SCN1AP35498 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
SCN1AP35498 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SCN1AP35498 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.05■■□□□ 1.44
SCN1AP35498 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
SCN1AP35498 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SCN1AP35498 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SCN1AP35498 SNX3-202ENST00000349379 890 ntTSL 2 BASIC24.05■■□□□ 1.44
SCN1AP35498 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
SCN1AP35498 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC24.05■■□□□ 1.44
SCN1AP35498 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
SCN1AP35498 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC24.05■■□□□ 1.44
SCN1AP35498 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SCN1AP35498 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SCN1AP35498 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
SCN1AP35498 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC24.05■■□□□ 1.44
SCN1AP35498 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
SCN1AP35498 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
SCN1AP35498 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
SCN1AP35498 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC24.04■■□□□ 1.44
SCN1AP35498 FP325331.1-202ENST00000623531 1380 ntBASIC24.04■■□□□ 1.44
SCN1AP35498 AP001330.3-201ENST00000520123 633 ntBASIC24.04■■□□□ 1.44
SCN1AP35498 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SCN1AP35498 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
SCN1AP35498 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SCN1AP35498 AC009086.3-201ENST00000623486 1008 ntBASIC24.03■■□□□ 1.44
SCN1AP35498 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SCN1AP35498 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SCN1AP35498 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms