Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMS3P0CW19 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LIMS3P0CW19 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMS3P0CW19 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMS3P0CW19 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMS3P0CW19 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
LIMS3P0CW19 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMS3P0CW19 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMS3P0CW19 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
LIMS3P0CW19 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMS3P0CW19 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMS3P0CW19 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMS3P0CW19 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMS3P0CW19 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMS3P0CW19 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.02■□□□□ 0.8
LIMS3P0CW19 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
LIMS3P0CW19 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMS3P0CW19 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMS3P0CW19 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.02■□□□□ 0.8
LIMS3P0CW19 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMS3P0CW19 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.02■□□□□ 0.79
LIMS3P0CW19 AC079630.1-202ENST00000618127 1840 ntBASIC20.02■□□□□ 0.79
LIMS3P0CW19 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LIMS3P0CW19 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.02■□□□□ 0.79
LIMS3P0CW19 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMS3P0CW19 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.01■□□□□ 0.79
LIMS3P0CW19 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.01■□□□□ 0.79
LIMS3P0CW19 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMS3P0CW19 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMS3P0CW19 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
LIMS3P0CW19 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.01■□□□□ 0.79
LIMS3P0CW19 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMS3P0CW19 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.01■□□□□ 0.79
LIMS3P0CW19 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.01■□□□□ 0.79
LIMS3P0CW19 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIMS3P0CW19 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMS3P0CW19 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LIMS3P0CW19 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIMS3P0CW19 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIMS3P0CW19 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.01■□□□□ 0.79
LIMS3P0CW19 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMS3P0CW19 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
LIMS3P0CW19 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMS3P0CW19 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMS3P0CW19 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20■□□□□ 0.79
LIMS3P0CW19 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
LIMS3P0CW19 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20■□□□□ 0.79
LIMS3P0CW19 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20■□□□□ 0.79
LIMS3P0CW19 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
LIMS3P0CW19 AC139530.1-201ENST00000575312 1977 ntBASIC20■□□□□ 0.79
LIMS3P0CW19 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMS3P0CW19 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMS3P0CW19 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMS3P0CW19 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
LIMS3P0CW19 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMS3P0CW19 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
LIMS3P0CW19 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMS3P0CW19 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMS3P0CW19 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.99■□□□□ 0.79
LIMS3P0CW19 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIMS3P0CW19 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.99■□□□□ 0.79
LIMS3P0CW19 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.99■□□□□ 0.79
LIMS3P0CW19 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
LIMS3P0CW19 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMS3P0CW19 AL137060.1-201ENST00000618151 2648 ntBASIC19.98■□□□□ 0.79
LIMS3P0CW19 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMS3P0CW19 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMS3P0CW19 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMS3P0CW19 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.98■□□□□ 0.79
LIMS3P0CW19 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMS3P0CW19 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMS3P0CW19 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIMS3P0CW19 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMS3P0CW19 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIMS3P0CW19 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMS3P0CW19 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMS3P0CW19 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LIMS3P0CW19 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMS3P0CW19 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMS3P0CW19 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMS3P0CW19 AL592293.1-201ENST00000502889 1188 ntBASIC19.97■□□□□ 0.79
LIMS3P0CW19 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LIMS3P0CW19 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.97■□□□□ 0.79
LIMS3P0CW19 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIMS3P0CW19 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMS3P0CW19 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMS3P0CW19 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIMS3P0CW19 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.97■□□□□ 0.79
LIMS3P0CW19 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.97■□□□□ 0.79
LIMS3P0CW19 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMS3P0CW19 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
LIMS3P0CW19 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
LIMS3P0CW19 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMS3P0CW19 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
LIMS3P0CW19 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms