Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UPK3AO75631 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.16■□□□□ 0.82
UPK3AO75631 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
UPK3AO75631 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
UPK3AO75631 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
UPK3AO75631 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UPK3AO75631 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.16■□□□□ 0.82
UPK3AO75631 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
UPK3AO75631 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
UPK3AO75631 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.16■□□□□ 0.82
UPK3AO75631 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK3AO75631 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK3AO75631 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.15■□□□□ 0.82
UPK3AO75631 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
UPK3AO75631 KRT16P3-201ENST00000439127 1283 ntBASIC20.15■□□□□ 0.82
UPK3AO75631 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
UPK3AO75631 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.15■□□□□ 0.82
UPK3AO75631 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK3AO75631 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK3AO75631 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
UPK3AO75631 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
UPK3AO75631 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
UPK3AO75631 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UPK3AO75631 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
UPK3AO75631 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.14■□□□□ 0.81
UPK3AO75631 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UPK3AO75631 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
UPK3AO75631 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.14■□□□□ 0.81
UPK3AO75631 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.14■□□□□ 0.81
UPK3AO75631 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UPK3AO75631 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
UPK3AO75631 AC092068.2-201ENST00000590491 1708 ntBASIC20.13■□□□□ 0.81
UPK3AO75631 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UPK3AO75631 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UPK3AO75631 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
UPK3AO75631 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
UPK3AO75631 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.13■□□□□ 0.81
UPK3AO75631 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.13■□□□□ 0.81
UPK3AO75631 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.13■□□□□ 0.81
UPK3AO75631 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.13■□□□□ 0.81
UPK3AO75631 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
UPK3AO75631 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
UPK3AO75631 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.13■□□□□ 0.81
UPK3AO75631 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
UPK3AO75631 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UPK3AO75631 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
UPK3AO75631 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.12■□□□□ 0.81
UPK3AO75631 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
UPK3AO75631 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
UPK3AO75631 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
UPK3AO75631 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
UPK3AO75631 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.12■□□□□ 0.81
UPK3AO75631 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.12■□□□□ 0.81
UPK3AO75631 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.12■□□□□ 0.81
UPK3AO75631 DUSP8P3-201ENST00000399571 1760 ntBASIC20.12■□□□□ 0.81
UPK3AO75631 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
UPK3AO75631 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
UPK3AO75631 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
UPK3AO75631 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
UPK3AO75631 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
UPK3AO75631 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
UPK3AO75631 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
UPK3AO75631 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
UPK3AO75631 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
UPK3AO75631 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.11■□□□□ 0.81
UPK3AO75631 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
UPK3AO75631 AL356441.2-201ENST00000443009 864 ntBASIC20.11■□□□□ 0.81
UPK3AO75631 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
UPK3AO75631 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
UPK3AO75631 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
UPK3AO75631 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.11■□□□□ 0.81
UPK3AO75631 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
UPK3AO75631 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
UPK3AO75631 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.1■□□□□ 0.81
UPK3AO75631 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
UPK3AO75631 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
UPK3AO75631 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
UPK3AO75631 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
UPK3AO75631 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
UPK3AO75631 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
UPK3AO75631 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.1■□□□□ 0.81
UPK3AO75631 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
UPK3AO75631 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.09■□□□□ 0.81
UPK3AO75631 AC005703.6-201ENST00000623265 1329 ntBASIC20.09■□□□□ 0.81
UPK3AO75631 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.09■□□□□ 0.81
UPK3AO75631 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.09■□□□□ 0.81
UPK3AO75631 MIR6724-1-201ENST00000616420 92 ntBASIC20.09■□□□□ 0.81
UPK3AO75631 MIR6724-2-201ENST00000616483 92 ntBASIC20.09■□□□□ 0.81
UPK3AO75631 MIR6724-4-201ENST00000617390 92 ntBASIC20.09■□□□□ 0.81
UPK3AO75631 MIR6724-3-201ENST00000622482 92 ntBASIC20.09■□□□□ 0.81
UPK3AO75631 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.09■□□□□ 0.81
UPK3AO75631 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.08■□□□□ 0.81
UPK3AO75631 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
UPK3AO75631 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
UPK3AO75631 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
UPK3AO75631 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.08■□□□□ 0.81
UPK3AO75631 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
UPK3AO75631 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
UPK3AO75631 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
UPK3AO75631 AL117328.2-201ENST00000624617 1940 ntBASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms