Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AL358852.1-201ENST00000623174 1268 ntBASIC28.38■■■□□ 2.13
NPHP1O15259 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
NPHP1O15259 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
NPHP1O15259 GTSE1-AS1-202ENST00000623117 1518 ntBASIC28.38■■■□□ 2.13
NPHP1O15259 AC141586.4-201ENST00000624558 1573 ntBASIC28.37■■■□□ 2.13
NPHP1O15259 HLA-L-211ENST00000482052 1765 ntBASIC28.37■■■□□ 2.13
NPHP1O15259 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
NPHP1O15259 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC28.37■■■□□ 2.13
NPHP1O15259 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
NPHP1O15259 ALDH1A3-203ENST00000557963 1670 ntBASIC28.37■■■□□ 2.13
NPHP1O15259 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
NPHP1O15259 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC28.36■■■□□ 2.13
NPHP1O15259 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC28.36■■■□□ 2.13
NPHP1O15259 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC28.36■■■□□ 2.13
NPHP1O15259 RAB43-208ENST00000615093 783 ntTSL 5 BASIC28.36■■■□□ 2.13
NPHP1O15259 MIR6084-201ENST00000622012 110 ntBASIC28.36■■■□□ 2.13
NPHP1O15259 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP1O15259 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP1O15259 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP1O15259 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC28.35■■■□□ 2.13
NPHP1O15259 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC28.35■■■□□ 2.13
NPHP1O15259 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
NPHP1O15259 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP1O15259 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
NPHP1O15259 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP1O15259 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC28.35■■■□□ 2.13
NPHP1O15259 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
NPHP1O15259 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC28.34■■■□□ 2.13
NPHP1O15259 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
NPHP1O15259 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC28.34■■■□□ 2.13
NPHP1O15259 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC28.34■■■□□ 2.13
NPHP1O15259 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC28.34■■■□□ 2.13
NPHP1O15259 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
NPHP1O15259 DUX4L2-201ENST00000561772 1275 ntBASIC28.34■■■□□ 2.13
NPHP1O15259 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.34■■■□□ 2.13
NPHP1O15259 DUX4L6-201ENST00000626483 1275 ntBASIC28.34■■■□□ 2.13
NPHP1O15259 DUX4L1-201ENST00000627662 1275 ntBASIC28.34■■■□□ 2.13
NPHP1O15259 DUX4L8-201ENST00000629013 1275 ntBASIC28.34■■■□□ 2.13
NPHP1O15259 DUX4L3-201ENST00000630187 1275 ntBASIC28.34■■■□□ 2.13
NPHP1O15259 DUX4L7-201ENST00000630678 1275 ntBASIC28.34■■■□□ 2.13
NPHP1O15259 DUX4L5-201ENST00000630834 1275 ntBASIC28.34■■■□□ 2.13
NPHP1O15259 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
NPHP1O15259 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
NPHP1O15259 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC28.34■■■□□ 2.13
NPHP1O15259 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
NPHP1O15259 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC28.34■■■□□ 2.13
NPHP1O15259 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
NPHP1O15259 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
NPHP1O15259 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.33■■■□□ 2.13
NPHP1O15259 GXYLT1P2-201ENST00000433312 1230 ntBASIC28.33■■■□□ 2.13
NPHP1O15259 IGHV3-19-201ENST00000521488 291 ntBASIC28.33■■■□□ 2.13
NPHP1O15259 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
NPHP1O15259 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC28.33■■■□□ 2.13
NPHP1O15259 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
NPHP1O15259 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
NPHP1O15259 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP1O15259 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP1O15259 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC28.32■■■□□ 2.12
NPHP1O15259 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC28.32■■■□□ 2.12
NPHP1O15259 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP1O15259 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP1O15259 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP1O15259 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC28.32■■■□□ 2.12
NPHP1O15259 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP1O15259 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC28.32■■■□□ 2.12
NPHP1O15259 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP1O15259 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP1O15259 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC28.31■■■□□ 2.12
NPHP1O15259 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC28.31■■■□□ 2.12
NPHP1O15259 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC28.31■■■□□ 2.12
NPHP1O15259 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP1O15259 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC28.3■■■□□ 2.12
NPHP1O15259 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
NPHP1O15259 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.3■■■□□ 2.12
NPHP1O15259 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
NPHP1O15259 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.3■■■□□ 2.12
NPHP1O15259 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC28.3■■■□□ 2.12
NPHP1O15259 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
NPHP1O15259 AC027612.3-201ENST00000413684 1047 ntBASIC28.3■■■□□ 2.12
NPHP1O15259 AC004911.1-201ENST00000416316 871 ntBASIC28.3■■■□□ 2.12
NPHP1O15259 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC28.3■■■□□ 2.12
NPHP1O15259 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC28.3■■■□□ 2.12
NPHP1O15259 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC28.29■■■□□ 2.12
NPHP1O15259 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
NPHP1O15259 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC28.29■■■□□ 2.12
NPHP1O15259 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC28.29■■■□□ 2.12
NPHP1O15259 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC28.29■■■□□ 2.12
NPHP1O15259 AC012414.1-201ENST00000556676 535 ntBASIC28.29■■■□□ 2.12
NPHP1O15259 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC28.29■■■□□ 2.12
NPHP1O15259 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
NPHP1O15259 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
NPHP1O15259 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
NPHP1O15259 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC28.29■■■□□ 2.12
NPHP1O15259 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC28.29■■■□□ 2.12
NPHP1O15259 AC145676.1-201ENST00000514988 2004 ntBASIC28.28■■■□□ 2.12
NPHP1O15259 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
NPHP1O15259 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NPHP1O15259 MIR572-201ENST00000384983 95 ntBASIC28.28■■■□□ 2.12
NPHP1O15259 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
NPHP1O15259 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC28.28■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms