Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A5A8TX70 RPS2P52-201ENST00000469610 820 ntBASIC17.82■□□□□ 0.44
COL6A5A8TX70 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A5A8TX70 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL6A5A8TX70 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A5A8TX70 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A5A8TX70 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A5A8TX70 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A5A8TX70 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.82■□□□□ 0.44
COL6A5A8TX70 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
COL6A5A8TX70 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A5A8TX70 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A5A8TX70 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL6A5A8TX70 ABCB10P1-201ENST00000614297 2181 ntBASIC17.81■□□□□ 0.44
COL6A5A8TX70 AC098934.4-201ENST00000564127 592 ntBASIC17.81■□□□□ 0.44
COL6A5A8TX70 AC011767.1-201ENST00000617410 1153 ntBASIC17.81■□□□□ 0.44
COL6A5A8TX70 AC009086.3-201ENST00000623486 1008 ntBASIC17.81■□□□□ 0.44
COL6A5A8TX70 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A5A8TX70 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A5A8TX70 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A5A8TX70 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL6A5A8TX70 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.81■□□□□ 0.44
COL6A5A8TX70 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL6A5A8TX70 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A5A8TX70 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.81■□□□□ 0.44
COL6A5A8TX70 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A5A8TX70 MIR1224-201ENST00000408193 85 ntBASIC17.8■□□□□ 0.44
COL6A5A8TX70 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COL6A5A8TX70 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A5A8TX70 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL6A5A8TX70 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.8■□□□□ 0.44
COL6A5A8TX70 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A5A8TX70 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL6A5A8TX70 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
COL6A5A8TX70 AC142472.1-201ENST00000612013 1741 ntBASIC17.79■□□□□ 0.44
COL6A5A8TX70 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A5A8TX70 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A5A8TX70 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A5A8TX70 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A5A8TX70 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A5A8TX70 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A5A8TX70 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A5A8TX70 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.79■□□□□ 0.44
COL6A5A8TX70 AC131274.2-201ENST00000580697 1507 ntBASIC17.79■□□□□ 0.44
COL6A5A8TX70 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A5A8TX70 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A5A8TX70 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A5A8TX70 AC098590.1-201ENST00000468126 897 ntBASIC17.78■□□□□ 0.44
COL6A5A8TX70 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A5A8TX70 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A5A8TX70 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A5A8TX70 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.78■□□□□ 0.44
COL6A5A8TX70 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A5A8TX70 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A5A8TX70 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A5A8TX70 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.78■□□□□ 0.44
COL6A5A8TX70 AL596275.1-201ENST00000423464 877 ntBASIC17.78■□□□□ 0.44
COL6A5A8TX70 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.78■□□□□ 0.44
COL6A5A8TX70 AP006294.2-201ENST00000641667 209 ntBASIC17.78■□□□□ 0.44
COL6A5A8TX70 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A5A8TX70 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.77■□□□□ 0.44
COL6A5A8TX70 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
COL6A5A8TX70 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A5A8TX70 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A5A8TX70 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A5A8TX70 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
COL6A5A8TX70 SPI1-203ENST00000533030 661 ntTSL 2 BASIC17.77■□□□□ 0.43
COL6A5A8TX70 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC17.77■□□□□ 0.43
COL6A5A8TX70 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC17.77■□□□□ 0.43
COL6A5A8TX70 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A5A8TX70 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A5A8TX70 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A5A8TX70 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.76■□□□□ 0.43
COL6A5A8TX70 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A5A8TX70 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC17.76■□□□□ 0.43
COL6A5A8TX70 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.76■□□□□ 0.43
COL6A5A8TX70 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.76■□□□□ 0.43
COL6A5A8TX70 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A5A8TX70 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A5A8TX70 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A5A8TX70 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A5A8TX70 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A5A8TX70 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL6A5A8TX70 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A5A8TX70 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A5A8TX70 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A5A8TX70 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL6A5A8TX70 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A5A8TX70 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.75■□□□□ 0.43
COL6A5A8TX70 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.75■□□□□ 0.43
COL6A5A8TX70 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL6A5A8TX70 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A5A8TX70 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A5A8TX70 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A5A8TX70 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A5A8TX70 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A5A8TX70 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A5A8TX70 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A5A8TX70 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL6A5A8TX70 DUX4L4-201ENST00000566884 1269 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms