Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 MIR6089-201ENST00000616698 64 ntBASIC24.85■■□□□ 1.57
TRIM43BA6NCK2 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.85■■□□□ 1.57
TRIM43BA6NCK2 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
TRIM43BA6NCK2 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
TRIM43BA6NCK2 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
TRIM43BA6NCK2 AC006015.1-201ENST00000429970 570 ntBASIC24.84■■□□□ 1.57
TRIM43BA6NCK2 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.84■■□□□ 1.57
TRIM43BA6NCK2 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
TRIM43BA6NCK2 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC24.84■■□□□ 1.57
TRIM43BA6NCK2 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
TRIM43BA6NCK2 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.83■■□□□ 1.57
TRIM43BA6NCK2 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC24.83■■□□□ 1.57
TRIM43BA6NCK2 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
TRIM43BA6NCK2 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.83■■□□□ 1.57
TRIM43BA6NCK2 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.83■■□□□ 1.57
TRIM43BA6NCK2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.83■■□□□ 1.57
TRIM43BA6NCK2 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.83■■□□□ 1.56
TRIM43BA6NCK2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
TRIM43BA6NCK2 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.83■■□□□ 1.56
TRIM43BA6NCK2 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
TRIM43BA6NCK2 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
TRIM43BA6NCK2 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
TRIM43BA6NCK2 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.82■■□□□ 1.56
TRIM43BA6NCK2 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
TRIM43BA6NCK2 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
TRIM43BA6NCK2 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
TRIM43BA6NCK2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 AC010525.1-201ENST00000585559 441 ntBASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 AC073111.5-205ENST00000641717 521 ntBASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
TRIM43BA6NCK2 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 AC133637.1-201ENST00000624115 1537 ntBASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.8■■□□□ 1.56
TRIM43BA6NCK2 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
TRIM43BA6NCK2 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 AC091060.1-201ENST00000623524 1766 ntBASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 LHPP-203ENST00000392757 840 ntTSL 3 BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 AC104771.1-201ENST00000603335 964 ntBASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TRIM43BA6NCK2 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
TRIM43BA6NCK2 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
TRIM43BA6NCK2 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
TRIM43BA6NCK2 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
TRIM43BA6NCK2 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC24.77■■□□□ 1.56
TRIM43BA6NCK2 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
TRIM43BA6NCK2 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC24.77■■□□□ 1.56
TRIM43BA6NCK2 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC24.77■■□□□ 1.56
TRIM43BA6NCK2 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC24.77■■□□□ 1.56
TRIM43BA6NCK2 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
TRIM43BA6NCK2 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC24.75■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms