Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
SMIM28A0A1B0GU29 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SMIM28A0A1B0GU29 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SMIM28A0A1B0GU29 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SMIM28A0A1B0GU29 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
SMIM28A0A1B0GU29 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SMIM28A0A1B0GU29 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SMIM28A0A1B0GU29 AP001330.3-201ENST00000520123 633 ntBASIC24.27■■□□□ 1.48
SMIM28A0A1B0GU29 AF213884.3-201ENST00000563833 479 ntBASIC24.27■■□□□ 1.48
SMIM28A0A1B0GU29 AC136469.2-201ENST00000623944 1028 ntBASIC24.27■■□□□ 1.48
SMIM28A0A1B0GU29 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
SMIM28A0A1B0GU29 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SMIM28A0A1B0GU29 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SMIM28A0A1B0GU29 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 MIR939-201ENST00000401314 82 ntBASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 pRNA.6-201ENST00000610482 90 ntBASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 pRNA.5-201ENST00000612139 90 ntBASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 pRNA.11-201ENST00000618423 90 ntBASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 pRNA.13-201ENST00000619112 90 ntBASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 ABCB10P4-201ENST00000566803 2184 ntBASIC24.26■■□□□ 1.47
SMIM28A0A1B0GU29 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SMIM28A0A1B0GU29 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SMIM28A0A1B0GU29 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 HYI-206ENST00000372434 1025 ntTSL 5 BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 FP325331.1-202ENST00000623531 1380 ntBASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMIM28A0A1B0GU29 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 MIR935-201ENST00000401179 91 ntBASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 ZNRF2P3-201ENST00000424200 374 ntBASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMIM28A0A1B0GU29 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SMIM28A0A1B0GU29 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SMIM28A0A1B0GU29 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SMIM28A0A1B0GU29 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SMIM28A0A1B0GU29 MAG-206ENST00000597035 542 ntTSL 4 BASIC24.21■■□□□ 1.47
SMIM28A0A1B0GU29 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SMIM28A0A1B0GU29 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SMIM28A0A1B0GU29 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
SMIM28A0A1B0GU29 AC144652.1-201ENST00000609974 1624 ntBASIC24.21■■□□□ 1.47
SMIM28A0A1B0GU29 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
SMIM28A0A1B0GU29 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SMIM28A0A1B0GU29 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC24.2■■□□□ 1.46
SMIM28A0A1B0GU29 AC091305.1-201ENST00000479476 895 ntBASIC24.2■■□□□ 1.46
SMIM28A0A1B0GU29 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC24.2■■□□□ 1.46
SMIM28A0A1B0GU29 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC24.2■■□□□ 1.46
SMIM28A0A1B0GU29 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
SMIM28A0A1B0GU29 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
SMIM28A0A1B0GU29 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SMIM28A0A1B0GU29 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SMIM28A0A1B0GU29 DUX4L4-201ENST00000566884 1269 ntBASIC24.19■■□□□ 1.46
SMIM28A0A1B0GU29 AC008764.7-201ENST00000593779 1081 ntBASIC24.19■■□□□ 1.46
SMIM28A0A1B0GU29 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SMIM28A0A1B0GU29 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms