Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRAV4A0A0B4J268 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 SNX5-217ENST00000606557 1087 ntBASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV4A0A0B4J268 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 BX664725.1-201ENST00000438252 379 ntBASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV4A0A0B4J268 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV4A0A0B4J268 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 DUSP8P3-201ENST00000399571 1760 ntBASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRAV4A0A0B4J268 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 AC068473.5-201ENST00000616428 2072 ntBASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV4A0A0B4J268 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
TRAV4A0A0B4J268 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC16.08■□□□□ 0.17
TRAV4A0A0B4J268 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC16.08■□□□□ 0.17
TRAV4A0A0B4J268 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC16.08■□□□□ 0.17
TRAV4A0A0B4J268 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV4A0A0B4J268 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV4A0A0B4J268 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV4A0A0B4J268 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV4A0A0B4J268 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV4A0A0B4J268 PRTG-204ENST00000561292 833 ntTSL 3 BASIC16.08■□□□□ 0.16
TRAV4A0A0B4J268 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV4A0A0B4J268 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms