Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 GH1-203ENST00000351388 685 ntTSL 2 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 AL359092.2-201ENST00000423330 585 ntBASIC15.25■□□□□ 0.03
LRCH3Q96II8 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 RPSAP70-201ENST00000504462 864 ntBASIC15.25■□□□□ 0.03
LRCH3Q96II8 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.25■□□□□ 0.03
LRCH3Q96II8 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 AC005777.1-201ENST00000588332 187 ntBASIC15.25■□□□□ 0.03
LRCH3Q96II8 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 AC022001.3-201ENST00000606330 596 ntBASIC15.25■□□□□ 0.03
LRCH3Q96II8 AC068631.1-255ENST00000608173 588 ntTSL 5 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 AC009041.4-201ENST00000620075 638 ntBASIC15.25■□□□□ 0.03
LRCH3Q96II8 AC148476.1-201ENST00000622182 705 ntBASIC15.25■□□□□ 0.03
LRCH3Q96II8 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.25■□□□□ 0.03
LRCH3Q96II8 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRCH3Q96II8 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 ASS1P1-201ENST00000402854 1237 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 DNM1P48-201ENST00000419538 439 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 FAM9B-203ENST00000428477 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 IL20RB-AS1-201ENST00000462176 562 ntTSL 4 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 MIR583HG-201ENST00000507997 704 ntTSL 2 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 KLF17P1-201ENST00000547105 1126 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 RN7SL556P-201ENST00000582856 298 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 AL355816.2-201ENST00000610049 647 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 BX322562.1-201ENST00000617004 561 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 AC126755.5-201ENST00000622756 267 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 AC026336.4-201ENST00000624565 1050 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC15.24■□□□□ 0.03
LRCH3Q96II8 AC067930.6-201ENST00000623257 4947 ntBASIC15.24■□□□□ 0.03
LRCH3Q96II8 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRCH3Q96II8 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LRCH3Q96II8 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LRCH3Q96II8 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LRCH3Q96II8 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LRCH3Q96II8 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LRCH3Q96II8 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LRCH3Q96II8 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LRCH3Q96II8 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LRCH3Q96II8 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LRCH3Q96II8 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LRCH3Q96II8 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC15.23■□□□□ 0.03
LRCH3Q96II8 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LRCH3Q96II8 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms