Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TPM1P09493 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TPM1P09493 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
TPM1P09493 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TPM1P09493 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC15.69■□□□□ 0.1
TPM1P09493 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
TPM1P09493 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.69■□□□□ 0.1
TPM1P09493 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM1P09493 USP39-207ENST00000450066 2086 ntTSL 2 BASIC15.69■□□□□ 0.1
TPM1P09493 ZNF398-201ENST00000426851 5268 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TPM1P09493 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM1P09493 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM1P09493 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
TPM1P09493 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC15.69■□□□□ 0.1
TPM1P09493 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.68■□□□□ 0.1
TPM1P09493 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
TPM1P09493 Z98257.2-202ENST00000641138 1548 ntBASIC15.68■□□□□ 0.1
TPM1P09493 ABCD1P2-201ENST00000429313 1601 ntBASIC15.68■□□□□ 0.1
TPM1P09493 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
TPM1P09493 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.68■□□□□ 0.1
TPM1P09493 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.68■□□□□ 0.1
TPM1P09493 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.68■□□□□ 0.1
TPM1P09493 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.68■□□□□ 0.1
TPM1P09493 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.68■□□□□ 0.1
TPM1P09493 FAM8A4P-201ENST00000435433 1213 ntBASIC15.68■□□□□ 0.1
TPM1P09493 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.68■□□□□ 0.1
TPM1P09493 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 INE1-201ENST00000456273 945 ntBASIC15.68■□□□□ 0.1
TPM1P09493 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 OR10B1P-201ENST00000601666 907 ntBASIC15.68■□□□□ 0.1
TPM1P09493 AC008494.3-201ENST00000606615 944 ntBASIC15.68■□□□□ 0.1
TPM1P09493 AC021016.3-201ENST00000608367 477 ntBASIC15.68■□□□□ 0.1
TPM1P09493 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 AC132938.4-201ENST00000623835 848 ntBASIC15.68■□□□□ 0.1
TPM1P09493 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC15.68■□□□□ 0.1
TPM1P09493 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TPM1P09493 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.68■□□□□ 0.1
TPM1P09493 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
TPM1P09493 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
TPM1P09493 AL359845.1-201ENST00000458202 1648 ntBASIC15.68■□□□□ 0.1
TPM1P09493 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TPM1P09493 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC15.68■□□□□ 0.1
TPM1P09493 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
TPM1P09493 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC15.67■□□□□ 0.1
TPM1P09493 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
TPM1P09493 ITGAL-201ENST00000356798 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TPM1P09493 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.67■□□□□ 0.1
TPM1P09493 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.67■□□□□ 0.1
TPM1P09493 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.67■□□□□ 0.1
TPM1P09493 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.67■□□□□ 0.1
TPM1P09493 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 SERBP1P5-201ENST00000510079 1181 ntBASIC15.67■□□□□ 0.1
TPM1P09493 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.67■□□□□ 0.1
TPM1P09493 CTBP2P3-201ENST00000585629 1255 ntBASIC15.67■□□□□ 0.1
TPM1P09493 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.67■□□□□ 0.1
TPM1P09493 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.67■□□□□ 0.1
TPM1P09493 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.67■□□□□ 0.1
TPM1P09493 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TPM1P09493 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms