Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 AC126335.2-201ENST00000623362 4637 ntBASIC16.67■□□□□ 0.26
HMGB1P09429 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HMGB1P09429 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB1P09429 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 FAM86MP-201ENST00000340703 885 ntBASIC16.67■□□□□ 0.26
HMGB1P09429 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB1P09429 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 CD164-210ENST00000512821 964 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB1P09429 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGB1P09429 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB1P09429 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
HMGB1P09429 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB1P09429 AC079336.7-201ENST00000623428 1078 ntBASIC16.67■□□□□ 0.26
HMGB1P09429 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HMGB1P09429 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB1P09429 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HMGB1P09429 RET-205ENST00000615310 4337 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB1P09429 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB1P09429 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB1P09429 AC004554.1-201ENST00000422830 1468 ntBASIC16.67■□□□□ 0.26
HMGB1P09429 AC138028.6-201ENST00000616106 1482 ntBASIC16.67■□□□□ 0.26
HMGB1P09429 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB1P09429 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB1P09429 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HMGB1P09429 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
HMGB1P09429 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HMGB1P09429 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HMGB1P09429 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGB1P09429 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGB1P09429 AL596276.2-201ENST00000447525 331 ntBASIC16.66■□□□□ 0.26
HMGB1P09429 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGB1P09429 KRT8P13-201ENST00000463294 1010 ntBASIC16.66■□□□□ 0.26
HMGB1P09429 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGB1P09429 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGB1P09429 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGB1P09429 AC243960.2-201ENST00000600996 747 ntBASIC16.66■□□□□ 0.26
HMGB1P09429 AC015967.2-201ENST00000624092 234 ntBASIC16.66■□□□□ 0.26
HMGB1P09429 AC006435.4-201ENST00000625037 234 ntBASIC16.66■□□□□ 0.26
HMGB1P09429 AL356737.1-201ENST00000634391 234 ntBASIC16.66■□□□□ 0.26
HMGB1P09429 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGB1P09429 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
HMGB1P09429 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC16.66■□□□□ 0.26
HMGB1P09429 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB1P09429 AC093462.1-201ENST00000621167 1683 ntBASIC16.65■□□□□ 0.26
HMGB1P09429 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB1P09429 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB1P09429 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB1P09429 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB1P09429 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
HMGB1P09429 STK25-235ENST00000543554 2556 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB1P09429 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HMGB1P09429 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms