Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 NAGK-202ENST00000418807 2343 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28BQ9BUN5 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28BQ9BUN5 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28BQ9BUN5 KRT17P5-202ENST00000444070 2552 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28BQ9BUN5 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC28BQ9BUN5 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28BQ9BUN5 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28BQ9BUN5 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 ACTG1P3-201ENST00000431775 1114 ntBASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 PTP4A1P2-201ENST00000546033 454 ntBASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 DUT-210ENST00000559935 569 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 TMBIM7P-202ENST00000641474 1516 ntBASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 AL590824.1-201ENST00000403828 1349 ntBASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 VRK3-209ENST00000594948 1847 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 AC002350.2-201ENST00000623894 1828 ntBASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 AL358781.1-202ENST00000321081 1360 ntBASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC28BQ9BUN5 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 PID1-204ENST00000409462 2387 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 CCT8L1P-201ENST00000465400 1674 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 C2-209ENST00000452323 1999 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AC103592.1-201ENST00000394513 664 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AC010141.1-201ENST00000411585 623 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 ECM1P1-201ENST00000604092 1279 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 LINC02084-201ENST00000606069 1096 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AL358472.3-201ENST00000608147 415 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms