Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
IFT140Q96RY7 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC22.39■■□□□ 1.18
IFT140Q96RY7 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.18
IFT140Q96RY7 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
IFT140Q96RY7 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC22.39■■□□□ 1.18
IFT140Q96RY7 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC22.39■■□□□ 1.17
IFT140Q96RY7 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
IFT140Q96RY7 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
IFT140Q96RY7 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC22.39■■□□□ 1.17
IFT140Q96RY7 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC22.39■■□□□ 1.17
IFT140Q96RY7 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
IFT140Q96RY7 AL117379.1-201ENST00000619319 677 ntBASIC22.39■■□□□ 1.17
IFT140Q96RY7 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC22.39■■□□□ 1.17
IFT140Q96RY7 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
IFT140Q96RY7 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
IFT140Q96RY7 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
IFT140Q96RY7 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
IFT140Q96RY7 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
IFT140Q96RY7 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
IFT140Q96RY7 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
IFT140Q96RY7 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
IFT140Q96RY7 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 ULBP3-201ENST00000367339 988 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 RNF7-202ENST00000393000 805 ntTSL 2 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 AL356583.3-201ENST00000412354 417 ntBASIC22.38■■□□□ 1.17
IFT140Q96RY7 AC234771.1-201ENST00000416873 250 ntTSL 2 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 AC010163.1-201ENST00000434440 520 ntTSL 2 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 AC010677.1-201ENST00000441690 412 ntBASIC22.38■■□□□ 1.17
IFT140Q96RY7 RN7SL16P-201ENST00000476316 269 ntBASIC22.38■■□□□ 1.17
IFT140Q96RY7 AC253536.5-201ENST00000506097 347 ntBASIC22.38■■□□□ 1.17
IFT140Q96RY7 AC092656.1-202ENST00000515843 998 ntTSL 4 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 SLC25A51P3-201ENST00000521814 889 ntBASIC22.38■■□□□ 1.17
IFT140Q96RY7 AKR1B1P3-201ENST00000525311 588 ntBASIC22.38■■□□□ 1.17
IFT140Q96RY7 AL352977.2-201ENST00000557101 547 ntTSL 4 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 RBP1-206ENST00000617459 667 ntTSL 2 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 AC138430.2-201ENST00000624068 504 ntBASIC22.38■■□□□ 1.17
IFT140Q96RY7 TUBB8-207ENST00000568866 1367 ntTSL 5 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 DNPEP-205ENST00000373972 1578 ntTSL 2 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC22.38■■□□□ 1.17
IFT140Q96RY7 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
IFT140Q96RY7 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
IFT140Q96RY7 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
IFT140Q96RY7 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
IFT140Q96RY7 CDC20P1-201ENST00000488829 1500 ntBASIC22.37■■□□□ 1.17
IFT140Q96RY7 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 AC131235.2-201ENST00000445553 1057 ntBASIC22.37■■□□□ 1.17
IFT140Q96RY7 SEMA6A-AS1-206ENST00000514214 782 ntTSL 3 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 KRT127P-201ENST00000547183 433 ntBASIC22.37■■□□□ 1.17
IFT140Q96RY7 AC079601.2-201ENST00000547729 775 ntBASIC22.37■■□□□ 1.17
IFT140Q96RY7 AC089987.3-201ENST00000551847 588 ntTSL 4 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 AC245369.3-201ENST00000624687 411 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
IFT140Q96RY7 MAFTRR-201ENST00000562921 1859 ntTSL 5 BASIC22.37■■□□□ 1.17
IFT140Q96RY7 DDC-212ENST00000615193 1674 ntTSL 3 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 AL356583.1-201ENST00000398739 1371 ntBASIC22.36■■□□□ 1.17
IFT140Q96RY7 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 LINC01508-201ENST00000425666 1013 ntTSL 3 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 AL391822.1-201ENST00000452580 562 ntBASIC22.36■■□□□ 1.17
IFT140Q96RY7 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 RN7SL111P-201ENST00000468841 285 ntBASIC22.36■■□□□ 1.17
IFT140Q96RY7 DMKN-244ENST00000480502 820 ntAPPRIS ALT2 TSL 3 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 MYL6-210ENST00000548400 573 ntTSL 3 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 Z82244.1-201ENST00000631502 840 ntBASIC22.36■■□□□ 1.17
IFT140Q96RY7 AC002511.3-201ENST00000638098 420 ntBASIC22.36■■□□□ 1.17
IFT140Q96RY7 GOLGA8EP-201ENST00000530246 1959 ntBASIC22.36■■□□□ 1.17
IFT140Q96RY7 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 ZNF577-202ENST00000451628 1771 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC22.36■■□□□ 1.17
IFT140Q96RY7 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms