Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 AC016397.2-201ENST00000624848 1985 ntBASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 RN7SKP212-201ENST00000410851 328 ntBASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 CD37-203ENST00000426897 1204 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 RPL29P2-201ENST00000488409 460 ntBASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 NF1P11-201ENST00000621292 1282 ntBASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC88AQ3V6T2 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 THAP4-203ENST00000402545 833 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 AC079250.1-201ENST00000456046 531 ntBASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 AC113398.1-201ENST00000464124 406 ntBASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 PKD1P1-201ENST00000458669 6805 ntBASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC88AQ3V6T2 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC000077.1-201ENST00000420012 953 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC005722.1-201ENST00000431878 964 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC093106.1-201ENST00000437271 352 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AK2P2-201ENST00000439142 405 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 COQ10BP2-201ENST00000513804 724 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC022001.3-201ENST00000606330 596 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 AC005912.2-201ENST00000619492 2400 ntBASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC88AQ3V6T2 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms