Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 GOLGA8IP-202ENST00000611635 2100 ntBASIC12.52□□□□□ -0.4
CX3CR1P49238 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CR1P49238 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CR1P49238 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC12.52□□□□□ -0.4
CX3CR1P49238 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC12.52□□□□□ -0.4
CX3CR1P49238 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CX3CR1P49238 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC12.52□□□□□ -0.41
CX3CR1P49238 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 MIR1909-201ENST00000411312 80 ntBASIC12.52□□□□□ -0.41
CX3CR1P49238 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 HLA-V-201ENST00000429037 534 ntBASIC12.52□□□□□ -0.41
CX3CR1P49238 AK2P2-201ENST00000439142 405 ntBASIC12.52□□□□□ -0.41
CX3CR1P49238 YBX1P6-201ENST00000442962 1002 ntBASIC12.52□□□□□ -0.41
CX3CR1P49238 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC12.52□□□□□ -0.41
CX3CR1P49238 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC12.52□□□□□ -0.41
CX3CR1P49238 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC12.52□□□□□ -0.41
CX3CR1P49238 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC12.52□□□□□ -0.41
CX3CR1P49238 AC022217.1-201ENST00000521069 738 ntBASIC12.52□□□□□ -0.41
CX3CR1P49238 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC12.52□□□□□ -0.41
CX3CR1P49238 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 USB1-203ENST00000539737 1212 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC12.52□□□□□ -0.41
CX3CR1P49238 KRT18P8-201ENST00000581937 1246 ntBASIC12.52□□□□□ -0.41
CX3CR1P49238 CYGB-203ENST00000589145 788 ntTSL 3 BASIC12.52□□□□□ -0.41
CX3CR1P49238 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC12.52□□□□□ -0.41
CX3CR1P49238 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 AL591471.1-201ENST00000621855 229 ntBASIC12.52□□□□□ -0.41
CX3CR1P49238 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CX3CR1P49238 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CR1P49238 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC12.52□□□□□ -0.41
CX3CR1P49238 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CR1P49238 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
CX3CR1P49238 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 AC079776.1-201ENST00000401540 1152 ntBASIC12.51□□□□□ -0.41
CX3CR1P49238 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 AC099336.1-201ENST00000417053 1171 ntBASIC12.51□□□□□ -0.41
CX3CR1P49238 OLR1-203ENST00000432556 950 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 U91328.1-201ENST00000437528 223 ntBASIC12.51□□□□□ -0.41
CX3CR1P49238 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CR1P49238 CSF2RBP1-201ENST00000447905 391 ntBASIC12.51□□□□□ -0.41
CX3CR1P49238 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC12.51□□□□□ -0.41
CX3CR1P49238 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 AGER-214ENST00000538695 487 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 RBM7-207ENST00000544582 692 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CR1P49238 AL512310.5-201ENST00000551999 515 ntBASIC12.51□□□□□ -0.41
CX3CR1P49238 AC140658.4-201ENST00000561990 352 ntBASIC12.51□□□□□ -0.41
CX3CR1P49238 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms