Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC12.39□□□□□ -0.43
COL8A1P27658 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC12.39□□□□□ -0.43
COL8A1P27658 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 AC020931.1-201ENST00000589622 1346 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 ADAMTS7P1-201ENST00000613213 4793 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
COL8A1P27658 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 OR52M2P-201ENST00000414298 959 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC12.38□□□□□ -0.43
COL8A1P27658 AP000244.1-201ENST00000424582 201 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 NRADDP-201ENST00000437305 691 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 GRPEL2P1-201ENST00000453145 339 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 EEF1GP8-201ENST00000506566 1154 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 ACY3-202ENST00000529256 933 ntTSL 3 BASIC12.38□□□□□ -0.43
COL8A1P27658 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC12.38□□□□□ -0.43
COL8A1P27658 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC12.38□□□□□ -0.43
COL8A1P27658 AC120498.7-201ENST00000562876 330 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 AL591424.3-201ENST00000614278 872 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC12.38□□□□□ -0.43
COL8A1P27658 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 AC009452.1-201ENST00000640823 606 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 AC067931.2-201ENST00000623655 2003 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 AP000845.1-201ENST00000581677 2131 ntBASIC12.38□□□□□ -0.43
COL8A1P27658 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.38□□□□□ -0.43
COL8A1P27658 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL8A1P27658 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC12.38□□□□□ -0.43
COL8A1P27658 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC12.38□□□□□ -0.43
COL8A1P27658 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
COL8A1P27658 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC12.37□□□□□ -0.43
COL8A1P27658 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
COL8A1P27658 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
COL8A1P27658 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms