Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 USB1-205ENST00000561743 1135 ntTSL 3 BASIC14.49□□□□□ -0.09
HMGA1P17096 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC14.49□□□□□ -0.09
HMGA1P17096 AC008972.2-201ENST00000606587 494 ntBASIC14.49□□□□□ -0.09
HMGA1P17096 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
HMGA1P17096 FO393412.1-201ENST00000619841 382 ntBASIC14.49□□□□□ -0.09
HMGA1P17096 MIR6746-201ENST00000620971 63 ntBASIC14.49□□□□□ -0.09
HMGA1P17096 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGA1P17096 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
HMGA1P17096 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 AC089987.1-201ENST00000551654 2209 ntBASIC14.49□□□□□ -0.09
HMGA1P17096 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
HMGA1P17096 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
HMGA1P17096 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGA1P17096 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGA1P17096 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGA1P17096 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGA1P17096 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGA1P17096 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGA1P17096 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC14.48□□□□□ -0.09
HMGA1P17096 FAM21EP-201ENST00000417804 985 ntBASIC14.48□□□□□ -0.09
HMGA1P17096 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGA1P17096 AK2P2-201ENST00000439142 405 ntBASIC14.48□□□□□ -0.09
HMGA1P17096 GALP-202ENST00000440823 889 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGA1P17096 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGA1P17096 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC14.48□□□□□ -0.09
HMGA1P17096 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC14.48□□□□□ -0.09
HMGA1P17096 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGA1P17096 AC141586.1-203ENST00000567242 366 ntBASIC14.48□□□□□ -0.09
HMGA1P17096 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC14.48□□□□□ -0.09
HMGA1P17096 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGA1P17096 MIR8071-1-201ENST00000616769 65 ntBASIC14.48□□□□□ -0.09
HMGA1P17096 MIR8071-2-201ENST00000616772 65 ntBASIC14.48□□□□□ -0.09
HMGA1P17096 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGA1P17096 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGA1P17096 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGA1P17096 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 FER1L4-210ENST00000615531 5998 ntBASIC14.48□□□□□ -0.09
HMGA1P17096 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
HMGA1P17096 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGA1P17096 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.47□□□□□ -0.09
HMGA1P17096 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC14.47□□□□□ -0.09
HMGA1P17096 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
HMGA1P17096 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HMGA1P17096 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HMGA1P17096 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HMGA1P17096 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC14.47□□□□□ -0.09
HMGA1P17096 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC14.47□□□□□ -0.09
HMGA1P17096 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HMGA1P17096 AC106827.1-201ENST00000366454 431 ntBASIC14.47□□□□□ -0.09
HMGA1P17096 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 AP000354.1-201ENST00000396982 456 ntBASIC14.47□□□□□ -0.09
HMGA1P17096 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC14.47□□□□□ -0.09
HMGA1P17096 KRT18P46-201ENST00000435568 1279 ntBASIC14.47□□□□□ -0.09
HMGA1P17096 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGA1P17096 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HMGA1P17096 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC14.47□□□□□ -0.09
HMGA1P17096 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms