Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 AL662890.1-201ENST00000396818 632 ntBASIC14.9□□□□□ -0.02
APOEP02649 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.9□□□□□ -0.02
APOEP02649 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.9□□□□□ -0.02
APOEP02649 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC14.9□□□□□ -0.02
APOEP02649 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 AC012618.1-201ENST00000461223 412 ntBASIC14.9□□□□□ -0.02
APOEP02649 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.9□□□□□ -0.02
APOEP02649 RN7SL277P-201ENST00000481521 288 ntBASIC14.9□□□□□ -0.02
APOEP02649 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.9□□□□□ -0.02
APOEP02649 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.9□□□□□ -0.02
APOEP02649 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.9□□□□□ -0.02
APOEP02649 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.9□□□□□ -0.02
APOEP02649 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.9□□□□□ -0.02
APOEP02649 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
APOEP02649 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.9□□□□□ -0.02
APOEP02649 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 AC130686.1-201ENST00000622936 2466 ntBASIC14.9□□□□□ -0.02
APOEP02649 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 AL359183.1-201ENST00000623796 2132 ntBASIC14.9□□□□□ -0.02
APOEP02649 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.9□□□□□ -0.02
APOEP02649 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
APOEP02649 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
APOEP02649 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
APOEP02649 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
APOEP02649 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.89□□□□□ -0.03
APOEP02649 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.89□□□□□ -0.03
APOEP02649 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.89□□□□□ -0.03
APOEP02649 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
APOEP02649 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC14.89□□□□□ -0.03
APOEP02649 AL353637.1-201ENST00000451571 732 ntBASIC14.89□□□□□ -0.03
APOEP02649 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.89□□□□□ -0.03
APOEP02649 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
APOEP02649 ARL16-210ENST00000574938 751 ntTSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 MIR3619-201ENST00000579667 83 ntBASIC14.89□□□□□ -0.03
APOEP02649 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
APOEP02649 AL022334.2-201ENST00000610000 484 ntBASIC14.89□□□□□ -0.03
APOEP02649 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC14.89□□□□□ -0.03
APOEP02649 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.89□□□□□ -0.03
APOEP02649 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
APOEP02649 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
APOEP02649 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
APOEP02649 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
APOEP02649 AL022313.4-201ENST00000562756 2046 ntBASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms