Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 AP001102.1-201ENST00000528959 409 ntBASIC13.53□□□□□ -0.24
VPS13AQ96RL7 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 AL590491.2-202ENST00000611126 418 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 AC011477.7-201ENST00000617163 1440 ntBASIC13.53□□□□□ -0.24
VPS13AQ96RL7 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 AP000437.1-201ENST00000624057 2085 ntBASIC13.53□□□□□ -0.24
VPS13AQ96RL7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 BCAR1P1-201ENST00000553953 636 ntBASIC13.53□□□□□ -0.24
VPS13AQ96RL7 MIR4326-201ENST00000582203 59 ntBASIC13.53□□□□□ -0.24
VPS13AQ96RL7 AC124944.3-201ENST00000607976 1304 ntBASIC13.53□□□□□ -0.24
VPS13AQ96RL7 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 RPS6-201ENST00000315377 863 ntTSL 3 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 AC159540.1-201ENST00000422600 555 ntTSL 4 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 RASGRF2-AS1-202ENST00000505694 535 ntTSL 3 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 HSPA8P5-201ENST00000456928 2069 ntBASIC13.52□□□□□ -0.24
VPS13AQ96RL7 HMGN1P4-201ENST00000419500 290 ntBASIC13.52□□□□□ -0.24
VPS13AQ96RL7 GAPDHP65-201ENST00000425487 1006 ntBASIC13.52□□□□□ -0.24
VPS13AQ96RL7 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 AC010163.1-201ENST00000434440 520 ntTSL 2 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 PLAC9P1-203ENST00000440031 223 ntBASIC13.52□□□□□ -0.24
VPS13AQ96RL7 LINC01664-202ENST00000441544 1175 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 AC245427.1-201ENST00000633705 760 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
VPS13AQ96RL7 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 MAFTRR-201ENST00000562921 1859 ntTSL 5 BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 SERPINB8P1-201ENST00000401898 377 ntBASIC13.52□□□□□ -0.25
VPS13AQ96RL7 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 AC136475.9-201ENST00000605240 497 ntBASIC13.52□□□□□ -0.25
VPS13AQ96RL7 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
VPS13AQ96RL7 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 METTL22-203ENST00000561758 1312 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 AL391903.1-201ENST00000407513 365 ntBASIC13.51□□□□□ -0.25
VPS13AQ96RL7 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.51□□□□□ -0.25
VPS13AQ96RL7 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 146.2 ms