Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 SALL4P5-201ENST00000419001 1760 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AHCYP2-201ENST00000430630 1300 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 MRPL37P1-201ENST00000592451 1337 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AL359183.1-201ENST00000623796 2132 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 MYT1-201ENST00000328439 5535 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AGER-206ENST00000375070 1463 ntTSL 5 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 BAATP1-201ENST00000412284 1225 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 KRTAP10-13P-201ENST00000412914 571 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 KRT18P66-201ENST00000452970 1269 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 VDAC1P7-201ENST00000462417 847 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AL359711.2-201ENST00000563105 872 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 MIR3907-201ENST00000579424 151 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 RN7SL555P-201ENST00000584742 339 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AC018635.2-201ENST00000608625 364 ntBASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 USP31-203ENST00000567975 2142 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC11.92□□□□□ -0.5
PDLIM3Q53GG5 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 RNF165-202ENST00000543885 4852 ntTSL 2 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
PDLIM3Q53GG5 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms