Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
COL28A1Q2UY09 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 AC011840.2-201ENST00000563063 1520 ntBASIC13.7□□□□□ -0.22
COL28A1Q2UY09 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 RN7SKP109-201ENST00000410592 316 ntBASIC13.7□□□□□ -0.22
COL28A1Q2UY09 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 GDNF-207ENST00000515058 764 ntTSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 AC138701.2-201ENST00000553634 226 ntBASIC13.7□□□□□ -0.22
COL28A1Q2UY09 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 MIR3188-201ENST00000583494 85 ntBASIC13.7□□□□□ -0.22
COL28A1Q2UY09 NAV1-210ENST00000593583 726 ntBASIC13.7□□□□□ -0.22
COL28A1Q2UY09 AC008825.2-201ENST00000603374 718 ntBASIC13.7□□□□□ -0.22
COL28A1Q2UY09 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL28A1Q2UY09 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 CTBP2P8-201ENST00000422584 1330 ntBASIC13.69□□□□□ -0.22
COL28A1Q2UY09 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 RPL35P9-201ENST00000446059 350 ntBASIC13.69□□□□□ -0.22
COL28A1Q2UY09 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AC026470.1-201ENST00000478038 846 ntBASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AC006122.1-201ENST00000493323 440 ntBASIC13.69□□□□□ -0.22
COL28A1Q2UY09 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms