Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC16.11■□□□□ 0.17
SCN4AP35499 IGHV1OR16-3-201ENST00000568138 205 ntBASIC16.11■□□□□ 0.17
SCN4AP35499 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC16.11■□□□□ 0.17
SCN4AP35499 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SCN4AP35499 AC008894.2-202ENST00000599676 1027 ntTSL 3 BASIC16.11■□□□□ 0.17
SCN4AP35499 AC117500.5-201ENST00000623233 527 ntBASIC16.11■□□□□ 0.17
SCN4AP35499 IMPDH1P5-201ENST00000439688 1540 ntBASIC16.11■□□□□ 0.17
SCN4AP35499 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SCN4AP35499 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SCN4AP35499 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 TBC1D3P1-201ENST00000590047 1693 ntBASIC16.11■□□□□ 0.17
SCN4AP35499 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SCN4AP35499 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
SCN4AP35499 HSPA7-201ENST00000445535 1927 ntBASIC16.11■□□□□ 0.17
SCN4AP35499 CD9-212ENST00000610354 1315 ntTSL 5 BASIC16.11■□□□□ 0.17
SCN4AP35499 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SCN4AP35499 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC16.11■□□□□ 0.17
SCN4AP35499 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.11■□□□□ 0.17
SCN4AP35499 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 SERF2-204ENST00000402131 586 ntTSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 PGAM1P10-201ENST00000402426 761 ntBASIC16.1■□□□□ 0.17
SCN4AP35499 HNRNPA1P68-201ENST00000425806 979 ntBASIC16.1■□□□□ 0.17
SCN4AP35499 AP000343.1-201ENST00000440602 385 ntBASIC16.1■□□□□ 0.17
SCN4AP35499 SMUG1-213ENST00000506595 712 ntTSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 IFI27L1-203ENST00000553664 647 ntTSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 MIR3940-201ENST00000579148 102 ntBASIC16.1■□□□□ 0.17
SCN4AP35499 NSRP1-213ENST00000584423 482 ntTSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 AL109983.1-201ENST00000603234 646 ntBASIC16.1■□□□□ 0.17
SCN4AP35499 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 SUCLG2-204ENST00000493112 1516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 CST11-202ENST00000377009 554 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 AL356653.1-201ENST00000402743 360 ntBASIC16.1■□□□□ 0.17
SCN4AP35499 RNA5SP407-201ENST00000410275 110 ntBASIC16.1■□□□□ 0.17
SCN4AP35499 IL6RP1-201ENST00000417848 1273 ntBASIC16.1■□□□□ 0.17
SCN4AP35499 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC16.1■□□□□ 0.17
SCN4AP35499 STEAP2-AS1-202ENST00000478318 627 ntTSL 3 BASIC16.1■□□□□ 0.17
SCN4AP35499 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC16.1■□□□□ 0.17
SCN4AP35499 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC16.1■□□□□ 0.17
SCN4AP35499 RPL30-213ENST00000523172 274 ntTSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 SAA2-206ENST00000530400 323 ntTSL 3 BASIC16.1■□□□□ 0.17
SCN4AP35499 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
SCN4AP35499 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SCN4AP35499 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCN4AP35499 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCN4AP35499 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCN4AP35499 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SCN4AP35499 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
SCN4AP35499 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCN4AP35499 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC16.09■□□□□ 0.17
SCN4AP35499 AP000437.1-201ENST00000624057 2085 ntBASIC16.09■□□□□ 0.17
SCN4AP35499 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms