Protein–RNA interactions for Protein: P16410

CTLA4, Cytotoxic T-lymphocyte protein 4, humanhuman

Predictions only

Length 223 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTLA4P16410 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CTLA4P16410 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 POM121L10P-201ENST00000436994 1285 ntBASIC12.61□□□□□ -0.39
CTLA4P16410 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC12.61□□□□□ -0.39
CTLA4P16410 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC12.61□□□□□ -0.39
CTLA4P16410 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC12.61□□□□□ -0.39
CTLA4P16410 AC007663.3-201ENST00000609632 465 ntBASIC12.61□□□□□ -0.39
CTLA4P16410 AC005695.3-201ENST00000614522 232 ntBASIC12.61□□□□□ -0.39
CTLA4P16410 AC068587.8-201ENST00000641239 219 ntBASIC12.61□□□□□ -0.39
CTLA4P16410 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
CTLA4P16410 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CTLA4P16410 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
CTLA4P16410 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 LINC01815-202ENST00000641468 1409 ntBASIC12.61□□□□□ -0.39
CTLA4P16410 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CTLA4P16410 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC12.61□□□□□ -0.39
CTLA4P16410 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.61□□□□□ -0.39
CTLA4P16410 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CTLA4P16410 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CTLA4P16410 DKFZP434A062-201ENST00000573103 5021 ntBASIC12.6□□□□□ -0.39
CTLA4P16410 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
CTLA4P16410 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.6□□□□□ -0.39
CTLA4P16410 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
CTLA4P16410 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 AL391647.1-201ENST00000395664 511 ntBASIC12.6□□□□□ -0.39
CTLA4P16410 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC12.6□□□□□ -0.39
CTLA4P16410 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC12.6□□□□□ -0.39
CTLA4P16410 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC12.6□□□□□ -0.39
CTLA4P16410 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC12.6□□□□□ -0.39
CTLA4P16410 IFT20-216ENST00000588477 774 ntTSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC12.6□□□□□ -0.39
CTLA4P16410 AC090164.2-201ENST00000611487 516 ntBASIC12.6□□□□□ -0.39
CTLA4P16410 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
CTLA4P16410 AC004923.1-202ENST00000642106 209 ntBASIC12.6□□□□□ -0.39
CTLA4P16410 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.6□□□□□ -0.39
CTLA4P16410 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC12.6□□□□□ -0.39
CTLA4P16410 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC12.6□□□□□ -0.39
CTLA4P16410 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC12.6□□□□□ -0.39
CTLA4P16410 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CTLA4P16410 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CTLA4P16410 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
CTLA4P16410 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CTLA4P16410 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CTLA4P16410 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CTLA4P16410 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
CTLA4P16410 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC12.59□□□□□ -0.39
CTLA4P16410 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms