Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AL136309.1-201ENST00000403917 691 ntBASIC16.18■□□□□ 0.18
ERCC4Q92889 AC010141.1-201ENST00000411585 623 ntBASIC16.18■□□□□ 0.18
ERCC4Q92889 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 AL645933.1-201ENST00000440087 609 ntBASIC16.18■□□□□ 0.18
ERCC4Q92889 HIST2H2BB-201ENST00000449108 381 ntBASIC16.18■□□□□ 0.18
ERCC4Q92889 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.18■□□□□ 0.18
ERCC4Q92889 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.18■□□□□ 0.18
ERCC4Q92889 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.18■□□□□ 0.18
ERCC4Q92889 C2orf69P2-201ENST00000562032 1123 ntBASIC16.18■□□□□ 0.18
ERCC4Q92889 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC16.18■□□□□ 0.18
ERCC4Q92889 AL022328.1-201ENST00000610050 478 ntBASIC16.18■□□□□ 0.18
ERCC4Q92889 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
ERCC4Q92889 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.18■□□□□ 0.18
ERCC4Q92889 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.18■□□□□ 0.18
ERCC4Q92889 AL358472.5-202ENST00000641448 1267 ntBASIC16.18■□□□□ 0.18
ERCC4Q92889 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.18■□□□□ 0.18
ERCC4Q92889 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
ERCC4Q92889 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC16.18■□□□□ 0.18
ERCC4Q92889 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.18■□□□□ 0.18
ERCC4Q92889 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ERCC4Q92889 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC16.18■□□□□ 0.18
ERCC4Q92889 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
ERCC4Q92889 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.17■□□□□ 0.18
ERCC4Q92889 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.17■□□□□ 0.18
ERCC4Q92889 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.17■□□□□ 0.18
ERCC4Q92889 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.17■□□□□ 0.18
ERCC4Q92889 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 KLF2P1-201ENST00000447438 1042 ntBASIC16.17■□□□□ 0.18
ERCC4Q92889 CROCCP4-201ENST00000457096 498 ntBASIC16.17■□□□□ 0.18
ERCC4Q92889 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
ERCC4Q92889 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.17■□□□□ 0.18
ERCC4Q92889 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC16.17■□□□□ 0.18
ERCC4Q92889 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.17■□□□□ 0.18
ERCC4Q92889 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.17■□□□□ 0.18
ERCC4Q92889 AP006547.1-201ENST00000563435 692 ntBASIC16.17■□□□□ 0.18
ERCC4Q92889 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.17■□□□□ 0.18
ERCC4Q92889 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 AL445250.1-201ENST00000641671 2259 ntBASIC16.17■□□□□ 0.18
ERCC4Q92889 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC16.17■□□□□ 0.18
ERCC4Q92889 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
ERCC4Q92889 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
ERCC4Q92889 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
ERCC4Q92889 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
ERCC4Q92889 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC16.16■□□□□ 0.18
ERCC4Q92889 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC16.16■□□□□ 0.18
ERCC4Q92889 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC16.16■□□□□ 0.18
ERCC4Q92889 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.16■□□□□ 0.18
ERCC4Q92889 AC006001.1-201ENST00000325130 474 ntBASIC16.16■□□□□ 0.18
ERCC4Q92889 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
ERCC4Q92889 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 AL512384.1-201ENST00000406683 331 ntBASIC16.16■□□□□ 0.18
ERCC4Q92889 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ERCC4Q92889 AL035414.1-201ENST00000451327 857 ntBASIC16.16■□□□□ 0.18
ERCC4Q92889 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.16■□□□□ 0.18
ERCC4Q92889 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.16■□□□□ 0.18
ERCC4Q92889 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms