Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 AL357054.4-201ENST00000606285 2814 ntBASIC10.08□□□□□ -0.8
CKS1BP61024 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 LINC00656-201ENST00000443744 1896 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 KCNV1-202ENST00000524391 6979 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 LINC01973-201ENST00000374983 4678 ntTSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 BARD1-201ENST00000260947 5499 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 EME1-202ENST00000393271 2354 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
CKS1BP61024 CACNA1C-213ENST00000399629 6562 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 MRVI1-209ENST00000531107 2887 ntAPPRIS P3 TSL 2 BASIC10.08□□□□□ -0.8
CKS1BP61024 LCMT2-201ENST00000305641 6957 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
CKS1BP61024 COL11A1-210ENST00000512756 5442 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 RNF125-201ENST00000217740 6020 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CKS1BP61024 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 DPAGT1-201ENST00000354202 2205 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 NAGK-202ENST00000418807 2343 ntTSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 EMBP1-203ENST00000622787 4235 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 KCNJ10-201ENST00000368089 5528 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 TSPEAR-201ENST00000323084 3967 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 SLC13A4-201ENST00000354042 2897 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 KLF8-202ENST00000374928 4821 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC10.07□□□□□ -0.8
CKS1BP61024 HLA-V-204ENST00000476601 1289 ntBASIC10.07□□□□□ -0.8
CKS1BP61024 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC10.07□□□□□ -0.8
CKS1BP61024 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC10.07□□□□□ -0.8
CKS1BP61024 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC10.07□□□□□ -0.8
CKS1BP61024 GPER1-207ENST00000619052 571 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 AREL1-201ENST00000356357 5456 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 DDX12P-201ENST00000432996 2947 ntBASIC10.07□□□□□ -0.8
CKS1BP61024 HAUS6-202ENST00000380502 6536 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 LINC02133-202ENST00000569726 2626 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 CYTH1-210ENST00000589297 3756 ntTSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 IKZF4-201ENST00000262032 5229 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 AL592528.1-201ENST00000380008 3466 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 DYNC1I1-204ENST00000437599 2895 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 KLC4-201ENST00000259708 2688 ntAPPRIS P4 TSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 AL645937.6-201ENST00000641122 3727 ntBASIC10.07□□□□□ -0.8
CKS1BP61024 LUZP1-201ENST00000302291 8898 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 TLE3-222ENST00000560589 3509 ntTSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 KRT8P22-201ENST00000562317 1415 ntBASIC10.07□□□□□ -0.8
CKS1BP61024 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 BAZ2A-201ENST00000379441 8831 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 MCU-204ENST00000536019 3224 ntTSL 2 BASIC10.07□□□□□ -0.8
CKS1BP61024 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CKS1BP61024 RNF130-207ENST00000522208 9945 ntTSL 5 BASIC10.07□□□□□ -0.8
CKS1BP61024 ITIH5-209ENST00000613909 2916 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CKS1BP61024 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
CKS1BP61024 DENND1C-201ENST00000381480 2816 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
CKS1BP61024 SLC35B4-201ENST00000378509 6797 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CKS1BP61024 ZNF142-201ENST00000411696 5926 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
CKS1BP61024 SLC7A1-201ENST00000380752 7347 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CKS1BP61024 FER1L5-204ENST00000623019 6477 ntAPPRIS ALT2 BASIC10.06□□□□□ -0.8
CKS1BP61024 CSAD-201ENST00000267085 2645 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CKS1BP61024 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC10.06□□□□□ -0.8
CKS1BP61024 AHI1-205ENST00000457866 5549 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
CKS1BP61024 GOLGA8VP-201ENST00000559009 1798 ntBASIC10.06□□□□□ -0.8
CKS1BP61024 AL354861.3-201ENST00000600140 2412 ntBASIC10.06□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms