Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 BRWD1P1-201ENST00000401091 371 ntBASIC12.75□□□□□ -0.37
CLRN1P58418 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 KRT18P36-201ENST00000411618 1276 ntBASIC12.75□□□□□ -0.37
CLRN1P58418 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 WBP2-203ENST00000433525 928 ntTSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 PTPA-218ENST00000435132 618 ntTSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 OR2R1P-201ENST00000441404 914 ntBASIC12.75□□□□□ -0.37
CLRN1P58418 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC12.75□□□□□ -0.37
CLRN1P58418 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 APOA2-204ENST00000464492 530 ntTSL 3 BASIC12.75□□□□□ -0.37
CLRN1P58418 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC12.75□□□□□ -0.37
CLRN1P58418 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC12.75□□□□□ -0.37
CLRN1P58418 RN7SL163P-201ENST00000583100 276 ntBASIC12.75□□□□□ -0.37
CLRN1P58418 AC005324.6-201ENST00000587972 613 ntBASIC12.75□□□□□ -0.37
CLRN1P58418 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 BNIP3P13-201ENST00000599968 566 ntBASIC12.75□□□□□ -0.37
CLRN1P58418 AC091271.1-201ENST00000611877 1162 ntBASIC12.75□□□□□ -0.37
CLRN1P58418 PCBP2-OT1-201ENST00000634357 590 ntBASIC12.75□□□□□ -0.37
CLRN1P58418 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.75□□□□□ -0.37
CLRN1P58418 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CLRN1P58418 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
CLRN1P58418 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.74□□□□□ -0.37
CLRN1P58418 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC12.74□□□□□ -0.37
CLRN1P58418 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC12.74□□□□□ -0.37
CLRN1P58418 AC023794.5-201ENST00000564380 2157 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 CETP-203ENST00000566128 1733 ntTSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC12.74□□□□□ -0.37
CLRN1P58418 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 TUBB1P2-201ENST00000422712 1306 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 TUBB1P1-201ENST00000503144 1300 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC12.74□□□□□ -0.37
CLRN1P58418 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 RPS3-201ENST00000278572 907 ntTSL 3 BASIC12.74□□□□□ -0.37
CLRN1P58418 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 HMGA1P1-201ENST00000415560 1062 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 VDAC1P1-201ENST00000439229 848 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC12.74□□□□□ -0.37
CLRN1P58418 FAM8A2P-201ENST00000528813 1142 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC12.74□□□□□ -0.37
CLRN1P58418 EID1-202ENST00000560490 584 ntTSL 3 BASIC12.74□□□□□ -0.37
CLRN1P58418 DERL2-202ENST00000570848 657 ntTSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC12.74□□□□□ -0.37
CLRN1P58418 Six3os1_5.1-201ENST00000611000 271 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 AC005695.3-201ENST00000614522 232 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 PRKN-211ENST00000615065 261 ntTSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.74□□□□□ -0.37
CLRN1P58418 AC004923.1-202ENST00000642106 209 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 AGAP10P-201ENST00000454844 2418 ntBASIC12.74□□□□□ -0.37
CLRN1P58418 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CLRN1P58418 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC12.74□□□□□ -0.37
CLRN1P58418 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms