Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR4326-201ENST00000582203 59 ntBASIC16.15■□□□□ 0.18
SMARCA1P28370 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.15■□□□□ 0.18
SMARCA1P28370 YRDCP1-201ENST00000621419 643 ntBASIC16.15■□□□□ 0.18
SMARCA1P28370 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC16.15■□□□□ 0.18
SMARCA1P28370 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SMARCA1P28370 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.15■□□□□ 0.18
SMARCA1P28370 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC16.15■□□□□ 0.18
SMARCA1P28370 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC16.15■□□□□ 0.18
SMARCA1P28370 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
SMARCA1P28370 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
SMARCA1P28370 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
SMARCA1P28370 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
SMARCA1P28370 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC16.14■□□□□ 0.18
SMARCA1P28370 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.14■□□□□ 0.17
SMARCA1P28370 PES1P2-201ENST00000449745 1735 ntBASIC16.14■□□□□ 0.17
SMARCA1P28370 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC16.14■□□□□ 0.17
SMARCA1P28370 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
SMARCA1P28370 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC16.14■□□□□ 0.17
SMARCA1P28370 OR2W2P-201ENST00000406313 909 ntBASIC16.14■□□□□ 0.17
SMARCA1P28370 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC16.14■□□□□ 0.17
SMARCA1P28370 EEF1DP2-201ENST00000433698 843 ntBASIC16.14■□□□□ 0.17
SMARCA1P28370 CSNK1G2P1-201ENST00000442675 955 ntBASIC16.14■□□□□ 0.17
SMARCA1P28370 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.14■□□□□ 0.17
SMARCA1P28370 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC16.14■□□□□ 0.17
SMARCA1P28370 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.14■□□□□ 0.17
SMARCA1P28370 AC012073.1-201ENST00000606114 1108 ntBASIC16.14■□□□□ 0.17
SMARCA1P28370 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
SMARCA1P28370 AL805961.1-201ENST00000642026 753 ntBASIC16.14■□□□□ 0.17
SMARCA1P28370 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SMARCA1P28370 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SMARCA1P28370 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SMARCA1P28370 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SMARCA1P28370 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.14■□□□□ 0.17
SMARCA1P28370 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 AC006480.2-201ENST00000609770 1337 ntBASIC16.14■□□□□ 0.17
SMARCA1P28370 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC16.14■□□□□ 0.17
SMARCA1P28370 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC16.14■□□□□ 0.17
SMARCA1P28370 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC16.14■□□□□ 0.17
SMARCA1P28370 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SMARCA1P28370 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SMARCA1P28370 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 MIR1307-201ENST00000408840 149 ntBASIC16.13■□□□□ 0.17
SMARCA1P28370 AC005722.1-201ENST00000431878 964 ntBASIC16.13■□□□□ 0.17
SMARCA1P28370 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SMARCA1P28370 RN7SL564P-201ENST00000496309 250 ntBASIC16.13■□□□□ 0.17
SMARCA1P28370 AP002803.1-201ENST00000528836 498 ntBASIC16.13■□□□□ 0.17
SMARCA1P28370 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC16.13■□□□□ 0.17
SMARCA1P28370 KRT8P2-201ENST00000556193 944 ntBASIC16.13■□□□□ 0.17
SMARCA1P28370 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 COG4-212ENST00000564653 590 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.13■□□□□ 0.17
SMARCA1P28370 MIR3940-201ENST00000579148 102 ntBASIC16.13■□□□□ 0.17
SMARCA1P28370 GAS7-216ENST00000583882 553 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC16.13■□□□□ 0.17
SMARCA1P28370 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.13■□□□□ 0.17
SMARCA1P28370 AC092171.5-201ENST00000608012 942 ntBASIC16.13■□□□□ 0.17
SMARCA1P28370 AL359091.4-201ENST00000610052 409 ntBASIC16.13■□□□□ 0.17
SMARCA1P28370 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SMARCA1P28370 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.13■□□□□ 0.17
SMARCA1P28370 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SMARCA1P28370 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SMARCA1P28370 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.13■□□□□ 0.17
SMARCA1P28370 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms